DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrrk and BAM1

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_001190624.1 Gene:BAM1 / 836699 AraportID:AT5G65700 Length:1003 Species:Arabidopsis thaliana


Alignment Length:1367 Identity:265/1367 - (19%)
Similarity:429/1367 - (31%) Gaps:510/1367 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   822 TASSKGSSSSATSFRASVLKSVCR--------HRRHLRLEALRTLILADNLLTRIQLSTDDATTL 878
            |.:....:|..:|::.|.  |.|.        .|||               :|.:.||       
plant    37 TGAGDDKNSPLSSWKVST--SFCTWIGVTCDVSRRH---------------VTSLDLS------- 77

  Fly   879 FNESEDADWSVVGVNRSKVIFPNLSMLDMTNN-CLKE------IPASLHELSSLSVLNISGNVNI 936
                        |:|.|..:.|::|.|.:..| .|.|      ||..:..||.|..||:|.||..
plant    78 ------------GLNLSGTLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFN 130

  Fly   937 TELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMDIVGYLKSIYEDAQPYARMKLMVVGV 1001
            ...|..:.  |.|.||                    :.:|:  |..::..|         :.|.|
plant   131 GSFPDEIS--SGLVNL--------------------RVLDV--YNNNLTGD---------LPVSV 162

  Fly  1002 AGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAKRMGHARSTSRSHRHSSASSANISTVGVDI 1066
            ..:   |.|..|..|.               |::|.:                       :....
plant   163 TNL---TQLRHLHLGG---------------NYFAGK-----------------------IPPSY 186

  Fly  1067 GTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQYFLSKRSLYLVLWRISDGHKGLAELLQWL 1131
            |:|             ||:          ||.|.                  .|::.:.::...:
plant   187 GSW-------------PVI----------EYLAV------------------SGNELVGKIPPEI 210

  Fly  1132 GNIQARAPNSPVIIVGTHFDAVGESISPQKAEQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCR 1196
            ||:.....    :.:| :::|..:.:.|: ...|.:|:|.      |....||...|.......:
plant   211 GNLTTLRE----LYIG-YYNAFEDGLPPE-IGNLSELVRF------DGANCGLTGEIPPEIGKLQ 263

  Fly  1197 TLHNIHLLANII-------YDTAMQLRSPGSKEPMLLQKIPASYIALEDIVNVIACNLRAAGRDP 1254
            .|..:.|..|:.       ..|...|:|......|...:||||:..|:::..:.....:..|..|
plant   264 KLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIP 328

  Fly  1255 VLDGEQYKRLVTEQMRLHNYKSFRDAAELQQATTWCHENGVLLHYDDATLRDYYFLDPQWLCDML 1319
            ...|                    |..||:....|  ||.                         
plant   329 EFIG--------------------DLPELEVLQLW--ENN------------------------- 346

  Fly  1320 AHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQGNGNRSYIVSLLNKFEVALTWDSRTLLIPSLL 1384
                       |..:...||.:            ||..:.:....||             :...|
plant   347 -----------FTGSIPQKLGE------------NGKLNLVDLSSNK-------------LTGTL 375

  Fly  1385 PSQEAATPNSGSTVKLSQRSRGRSLGCSVSQEVNLNNLIYEQRSAPSSSSSSASVSQGLRRILLM 1449
            |      ||..|..||...             :.|.|.::      .|...|....:.|.||.:.
plant   376 P------PNMCSGNKLETL-------------ITLGNFLF------GSIPDSLGKCESLTRIRMG 415

  Fly  1450 TYFPSGFWSRLITRILADEQIIEAIRGVYMASQ-----DYADFDLRTSLEQDTQWNLWQTGLA-- 1507
            ..|.:|             .|.:.:.|:...:|     :|...:|  .:......||.|..|:  
plant   416 ENFLNG-------------SIPKGLFGLPKLTQVELQDNYLSGEL--PVAGGVSVNLGQISLSNN 465

  Fly  1508 LYYGPILIFKIWEVPFQKTERTQPFRTDGNRFKLKQDGIWSDV-NLSSSSILEVYFPLYEVNISQ 1571
            ...||:      ..........|....|||:|   |..|.|:| .|...|.::....|:...|:.
plant   466 QLSGPL------PPAIGNFTGVQKLLLDGNKF---QGPIPSEVGKLQQLSKIDFSHNLFSGRIAP 521

  Fly  1572 E---------VDDNERQLLAEIRPHMS--QVAKLLALTVDHIDLLLEDWYPSLGTRFVHTSEGRF 1625
            |         ||.:..:|..||...::  ::...|.|:.:|:          :|:          
plant   522 EISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHL----------VGS---------- 566

  Fly  1626 LITRLVLCPRCLWKLQLQQNNEPSDREVPPVGCNRPSRSSRRGAG--AYFLHG--VGDPGEDGAL 1686
             |...:...:.|..|....||  ....||             |.|  :||.:.  :|:|      
plant   567 -IPGSISSMQSLTSLDFSYNN--LSGLVP-------------GTGQFSYFNYTSFLGNP------ 609

  Fly  1687 NVFSAYLNATARRERRSEDSLGAGSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAWMIE 1751
            ::...||..       .:|.:..|.......||.|| |.:...|.|         ..||......
plant   610 DLCGPYLGP-------CKDGVAKGGHQSHSKGPLSA-SMKLLLVLG---------LLVCSIAFAV 657

  Fly  1752 ECILSVYNQSKISCPVHLEQSMAQLAP----DVIFADIPDKHTIPSECIIKGSLLGRGAFGFVFK 1812
            ..|:...:..|.|     |....:|..    |....|:.|.       :.:.:::|:|..|.|:|
plant   658 VAIIKARSLKKAS-----ESRAWRLTAFQRLDFTCDDVLDS-------LKEDNIIGKGGAGIVYK 710

  Fly  1813 ANCKVRGARSFKP----VAMKMLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQE 1873
                     ...|    ||:|.|..:..|:..                    .|...|      |
plant   711 ---------GVMPNGDLVAVKRLAAMSRGSSH--------------------DHGFNA------E 740

  Fly  1874 LAVLLTLKHPNIVPLVGICI--KPLALVLELAPLGGLDALLRHYRRSGAHMGPHTFQTLVLQAAR 1936
            :..|..::|.:||.|:|.|.  :...||.|..|.|.|..:|  :.:.|.|:...|...:.|:||:
plant   741 IQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVL--HGKKGGHLHWDTRYKIALEAAK 803

  Fly  1937 AIEYLHR---RRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYGISRQTAPSGA----KG 1994
            .:.|||.   ..|::||:||.|:|:....:.|            :||:|:::....||.    ..
plant   804 GLCYLHHDCSPLIVHRDVKSNNILLDSNFEAH------------VADFGLAKFLQDSGTSECMSA 856

  Fly  1995 FGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQPF----EG----------HESIK 2045
            ..|:.|::|||   |....:..||.|.:|||:.:.|.::.|:|.    :|          .:|.|
plant   857 IAGSYGYIAPE---YAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNK 918

  Fly  2046 ECILEGSRPALTQRETQFPTCCLDLMVLCWHEQPRRRPTASQIVSIL----------------SA 2094
            :.:|:...|.|:.......|....:.:||..||...|||..::|.||                ||
plant   919 DSVLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILTEIPKLPPSKDQPMTESA 983

  Fly  2095 PE 2096
            ||
plant   984 PE 985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566 20/84 (24%)
leucine-rich repeat 855..901 CDD:275380 6/45 (13%)
leucine-rich repeat 902..924 CDD:275380 8/28 (29%)
leucine-rich repeat 925..949 CDD:275380 8/23 (35%)
P-loop_NTPase 993..1211 CDD:304359 31/224 (14%)
COR 1230..1471 CDD:292713 36/240 (15%)
STYKc 1796..2092 CDD:214568 80/322 (25%)
STKc_LRRK 1801..2095 CDD:270902 83/336 (25%)
BAM1NP_001190624.1 PLN00113 25..965 CDD:215061 259/1345 (19%)
leucine-rich repeat 71..94 CDD:275380 9/41 (22%)
leucine-rich repeat 95..118 CDD:275380 6/22 (27%)
leucine-rich repeat 119..143 CDD:275380 9/25 (36%)
leucine-rich repeat 144..167 CDD:275380 6/56 (11%)
leucine-rich repeat 168..215 CDD:275380 15/125 (12%)
leucine-rich repeat 216..240 CDD:275380 4/29 (14%)
leucine-rich repeat 241..264 CDD:275380 6/28 (21%)
leucine-rich repeat 265..288 CDD:275380 4/22 (18%)
leucine-rich repeat 289..312 CDD:275380 8/22 (36%)
leucine-rich repeat 337..360 CDD:275380 8/72 (11%)
leucine-rich repeat 361..384 CDD:275380 7/41 (17%)
leucine-rich repeat 385..406 CDD:275380 5/39 (13%)
leucine-rich repeat 409..432 CDD:275380 7/35 (20%)
leucine-rich repeat 433..456 CDD:275380 3/24 (13%)
leucine-rich repeat 457..480 CDD:275380 5/28 (18%)
leucine-rich repeat 481..504 CDD:275380 10/25 (40%)
leucine-rich repeat 505..528 CDD:275380 4/22 (18%)
leucine-rich repeat 529..550 CDD:275380 5/20 (25%)
leucine-rich repeat 553..576 CDD:275380 5/43 (12%)
leucine-rich repeat 577..596 CDD:275380 7/33 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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