DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT5G01890

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_195809.1 Gene:AT5G01890 / 831677 AraportID:AT5G01890 Length:967 Species:Arabidopsis thaliana


Alignment Length:794 Identity:178/794 - (22%)
Similarity:288/794 - (36%) Gaps:286/794 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   544 LTAITRIDFSHNVLT-SIPQELFHLVSLRYLNVAQNKIT-DLPAPIGQTYGCPVLDELFLQDNQL 606
            |.::..:|||||.|. .||..|..|..||::|:::|..: |:|:.||:   |..|..|.|.:|..
plant   188 LKSLKSLDFSHNFLQGDIPDGLGGLYDLRHINLSRNWFSGDVPSDIGR---CSSLKSLDLSENYF 249

  Fly   607 T-------------------------TLPAAIFHLPALSILDVS-NNKLQQLPFDLWRAPKLREL 645
            :                         .:|..|..:..|.|||:| ||....:||.|.....|::|
plant   250 SGNLPDSMKSLGSCSSIRLRGNSLIGEIPDWIGDIATLEILDLSANNFTGTVPFSLGNLEFLKDL 314

  Fly   646 NVAFNLLR-DLPVPPMQTSSSLLSLDKLNLQSFEEPPSNKPRNVTQQRLTHRNLWSATLDITDND 709
            |::.|:|. :|| ..:...|:|:|:| ::..||                            |.:.
plant   315 NLSANMLAGELP-QTLSNCSNLISID-VSKNSF----------------------------TGDV 349

  Fly   710 MKWQ---------------HEQDLGDGKTAGVGSSQ-LSSLNIANNLFT-SIPAALPCLAVNLTR 757
            :||.               |::...|.....||..| |..|::::|.|| .:|:.: .:..:|.:
plant   350 LKWMFTGNSESSSLSRFSLHKRSGNDTIMPIVGFLQGLRVLDLSSNGFTGELPSNI-WILTSLLQ 413

  Fly   758 LNMSYNSLRSMGHVTSYPATLKQ---LDLSHNEISCWPSLPRITESDPHLLCYSCVQLPEGRDDD 819
            ||||.|||  .|.:.:....||.   ||||.|.::  .:||                        
plant   414 LNMSTNSL--FGSIPTGIGGLKVAEILDLSSNLLN--GTLP------------------------ 450

  Fly   820 YKTASSKGSSSSATSFRASVLKSVCRHRRHL---------RLEALRTLILADNLLTRIQLSTDDA 875
                |..|.:.|        ||.:..||..|         ...||.|:.|::|.|:         
plant   451 ----SEIGGAVS--------LKQLHLHRNRLSGQIPAKISNCSALNTINLSENELS--------- 494

  Fly   876 TTLFNESEDADWSVVGVNRSKVIFPNLSMLDMT-NNCLKEIPASLHELSSLSVLNISGNVNIT-E 938
                       .::.|...|   ..||..:|:: ||....:|..:.:||.|...|||.| ||| |
plant   495 -----------GAIPGSIGS---LSNLEYIDLSRNNLSGSLPKEIEKLSHLLTFNISHN-NITGE 544

  Fly   939 LPPH-----------LGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMD---IVGYL-KSIYEDA 988
            ||..           .|..|...::..|.||...|...::........:   :.|.: ||:...:
plant   545 LPAGGFFNTIPLSAVTGNPSLCGSVVNRSCLSVHPKPIVLNPNSSNPTNGPALTGQIRKSVLSIS 609

  Fly   989 QPYARMKLMVVGVA-----GIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAKRMGHARSTSRS 1048
                  .|:.:|.|     |:...|||::                            ||||:  .
plant   610 ------ALIAIGAAAVIAIGVVAVTLLNV----------------------------HARSS--V 638

  Fly  1049 HRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYAT--HQYFLSK---- 1107
            .||.:|::..:| ||   .|:.|...|  ....|.:|.    |.|:.:.:.|  ....|:|    
plant   639 SRHDAAAALALS-VG---ETFSCSPSK--DQEFGKLVM----FSGEVDVFDTTGADALLNKDSEL 693

  Fly  1108 -RSLYLVLWRIS--DGHKGLAELLQWLGNIQARAP-------------NSPVIIVGTHFDAVGES 1156
             |..:.|:::.|  ||.....:.|...|.|:::..             .:.|.|.|.::      
plant   694 GRGGFGVVYKTSLQDGRPVAVKKLTVSGLIKSQEEFEREMRKLGKLRHKNVVEIKGYYW------ 752

  Fly  1157 ISPQKAEQLQQLI-----------------------REKFIAIPDAEKIGLPRVIDSIEISCRTL 1198
                 .:.||.||                       |::|..|     :|:.|.:..:..|..|.
plant   753 -----TQSLQLLIHEFVSGGSLYRHLHGDESVCLTWRQRFSII-----LGIARGLAFLHSSNITH 807

  Fly  1199 HNIHLLANIIYDTA 1212
            :|:. ..|::.|.|
plant   808 YNMK-ATNVLIDAA 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566 15/36 (42%)
leucine-rich repeat 547..569 CDD:275380 10/22 (45%)
LRR_8 569..629 CDD:290566 22/86 (26%)
leucine-rich repeat 570..595 CDD:275380 9/25 (36%)
leucine-rich repeat 596..618 CDD:275380 6/46 (13%)
leucine-rich repeat 619..641 CDD:275380 10/22 (45%)
leucine-rich repeat 642..676 CDD:275380 11/34 (32%)
leucine-rich repeat 677..730 CDD:275380 8/67 (12%)
LRR_8 729..788 CDD:290566 23/63 (37%)
leucine-rich repeat 731..754 CDD:275380 6/23 (26%)
LRR_8 855..933 CDD:290566 19/78 (24%)
leucine-rich repeat 855..901 CDD:275380 7/45 (16%)
leucine-rich repeat 902..924 CDD:275380 6/22 (27%)
leucine-rich repeat 925..949 CDD:275380 13/35 (37%)
P-loop_NTPase 993..1211 CDD:304359 51/267 (19%)
COR 1230..1471 CDD:292713
STYKc 1796..2092 CDD:214568
STKc_LRRK 1801..2095 CDD:270902
AT5G01890NP_195809.1 PLN00113 7..957 CDD:215061 178/794 (22%)
LRRNT_2 25..64 CDD:285463
LRR_RI <83..270 CDD:238064 24/84 (29%)
leucine-rich repeat 91..117 CDD:275380
leucine-rich repeat 118..142 CDD:275380
leucine-rich repeat 143..166 CDD:275380
leucine-rich repeat 167..190 CDD:275380 1/1 (100%)
leucine-rich repeat 191..214 CDD:275380 10/22 (45%)
leucine-rich repeat 215..238 CDD:275380 9/25 (36%)
leucine-rich repeat 239..262 CDD:275380 4/22 (18%)
leucine-rich repeat 263..286 CDD:275380 2/22 (9%)
leucine-rich repeat 287..310 CDD:275380 10/22 (45%)
leucine-rich repeat 311..334 CDD:275380 7/23 (30%)
LRR_RI <386..544 CDD:238064 56/222 (25%)
leucine-rich repeat 387..410 CDD:275380 6/23 (26%)
leucine-rich repeat 411..434 CDD:275380 10/24 (42%)
leucine-rich repeat 435..458 CDD:275380 9/52 (17%)
leucine-rich repeat 459..482 CDD:275380 5/22 (23%)
leucine-rich repeat 483..506 CDD:275380 7/45 (16%)
leucine-rich repeat 507..530 CDD:275380 6/22 (27%)
leucine-rich repeat 531..550 CDD:275380 11/19 (58%)
STKc_IRAK 693..959 CDD:270968 26/145 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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