DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT5G10020

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_196564.1 Gene:AT5G10020 / 830865 AraportID:AT5G10020 Length:1048 Species:Arabidopsis thaliana


Alignment Length:1502 Identity:288/1502 - (19%)
Similarity:465/1502 - (30%) Gaps:585/1502 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   686 RNVTQQRLTHRNL-WSATLDITD-----NDMKWQHEQDLG---DGKTAGVGSSQLSSLNIANNLF 741
            |...:...:|:.: ||.|..:||     ||  |.     |   |.:|..:.:..|....::..|.
plant    34 RKGIRDETSHQRISWSDTSSLTDPSTCPND--WP-----GISCDPETGSIIAINLDRRGLSGELK 91

  Fly   742 TSIPAALPCLAVNLTRLNMSYNS-----LRSMGHVTSYPATLKQLDLSHNEISCWPSLP-RITE- 799
            .|..:.|    ..|..|::|.||     :.|:|.::|    |:.||||.|  ..:..:| ||:| 
plant    92 FSTLSGL----TRLRNLSLSGNSFSGRVVPSLGGISS----LQHLDLSDN--GFYGPIPGRISEL 146

  Fly   800 -SDPHLLCYSCVQLPEGRDDDYKTASSKGSSSSATSFRASVLKSVCRHRRHLRLEALRTLILADN 863
             |..||                ..:|:|......:.||              .|:.||:|.|..|
plant   147 WSLNHL----------------NLSSNKFEGGFPSGFR--------------NLQQLRSLDLHKN 181

  Fly   864 LLTRIQLSTDDATTLFNESEDADWSVVGVNR-----------SKVIFPNLSMLDMTNNCLKE--- 914
            .:      ..|...:|.|.::.::..:..||           ...|...|..|::::|.|..   
plant   182 EI------WGDVGEIFTELKNVEFVDLSCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFF 240

  Fly   915 IPASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMDIVG 979
            ...|:....:|.::::..|....|| ||.|               .:|...:::..:::...:|.
plant   241 SEESIGSFKNLEIVDLENNQINGEL-PHFG---------------SQPSLRILKLARNELFGLVP 289

  Fly   980 YLKSIYEDAQPYARMKLMVVGVAG----IGKSTL--LDLLRQGAGSGSSSSSHRSRASENHWAKR 1038
              :.:.:.:.|...:.|...|..|    |..|||  |:|...|. ||...||.:|          
plant   290 --QELLQSSIPLLELDLSRNGFTGSISEINSSTLTMLNLSSNGL-SGDLPSSFKS---------- 341

  Fly  1039 MGHARSTSRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQY 1103
                         .|....:.:|...|:.                 |.:.|:        ||...
plant   342 -------------CSVIDLSGNTFSGDVS-----------------VVQKWE--------ATPDV 368

  Fly  1104 F-LSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPN-----SPVIIVGTHFDAVGESISPQKA 1162
            . ||.                        .|:....||     |.:.::....::|..|      
plant   369 LDLSS------------------------NNLSGSLPNFTSAFSRLSVLSIRNNSVSGS------ 403

  Fly  1163 EQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPMLLQ 1227
                                 ||.:....:.|.     |.|.:|         :..|.       
plant   404 ---------------------LPSLWGDSQFSV-----IDLSSN---------KFSGF------- 426

  Fly  1228 KIPASYIALEDI--VNVIACNLRAAGRDPVLDGEQYKRLVTEQMRLHNYKSFRD--AAELQQATT 1288
             ||.|:.....:  :|:...||..    |:                    .||.  |:||.    
plant   427 -IPVSFFTFASLRSLNLSRNNLEG----PI--------------------PFRGSRASELL---- 462

  Fly  1289 WCHENGVLLHYDDATLRDYYFLDPQWLCDMLAHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQG 1353
                  ||..|....|.|   |....|..||             |..:..::.:::|    .:..
plant   463 ------VLNSYPQMELLD---LSTNSLTGML-------------PGDIGTMEKIKVL----NLAN 501

  Fly  1354 NGNRSYIVSLLNKFEVALTWD--SRTL--LIPSLLPSQEAATPNSGSTVKLSQRSRGRSLGCSVS 1414
            |.....:.|.|||....|..|  :.|.  .||:.||||                    .:|.:||
plant   502 NKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLPSQ--------------------MVGFNVS 546

  Fly  1415 QEVNLNNLIYEQ-RSAPSSSSSSASVSQGLRRILLMTYFPSGFWSRLITRILADEQIIEAIRGVY 1478
            .. :|:.:|.|. ||.|.||                 ::|......|..||.||.....::.|  
plant   547 YN-DLSGIIPEDLRSYPPSS-----------------FYPGNSKLSLPGRIPADSSGDLSLPG-- 591

  Fly  1479 MASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPFQKTERTQPFRTDG-NRFKLK 1542
              .:.::...:|.::      .:...|.|:    :::|.::..     .|||.....| |||  .
plant   592 --KKHHSKLSIRIAI------IVASVGAAI----MILFVLFAY-----HRTQLKDFHGRNRF--T 637

  Fly  1543 QDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHMSQVAKLLALTVDHIDLLLE 1607
            ......|.....||...::      |.|..|:               |.:..|:.:.||      
plant   638 DQATTRDTKFGRSSRPSLF------NFSSNVE---------------QQSSSLSFSNDH------ 675

  Fly  1608 DWYPSLGTRFVHTSEGRFLITRLVLCPRCLWKLQLQQNNEPSDREVPPVGCNRPSRSSRRGAGAY 1672
                              |:|.                |..|...:|  ||.  :..|.:||   
plant   676 ------------------LLTA----------------NSRSLSGIP--GCE--AEISEQGA--- 699

  Fly  1673 FLHGVGDPGEDGALNVFSAYLNATARRERRSEDSLGAGSDADSGVGPDSAGSSRNTSVDGHPGYH 1737
                   |......|:...|                            .|.|.|.:|..|.|...
plant   700 -------PATSAPTNLLDDY----------------------------PAASGRKSSSGGSPLSS 729

  Fly  1738 LPDNSNVCYAWMIEECILSVYNQSKISCPVHLEQSMAQLAPDVIFADIPDKHTIPSECIIKGSLL 1802
            .|..|:       :..:|.||:..:             ||.::.|.|:..|.|..........:|
plant   730 SPRFSD-------QPVMLDVYSPDR-------------LAGELFFLDVSLKLTAEELSRAPAEVL 774

  Fly  1803 GRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAY 1867
            ||.:.|.::||                              .|....:...||.|..|....|.:
plant   775 GRSSHGTLYKA------------------------------TLDNGHMLTVKWLRVGLVRHKKDF 809

  Fly  1868 CTARQELAVLLTLKHPNIVPLVGICIKPLALVLELAPLGGLDALLRHYRRSGAHMGPHTFQT--- 1929
            ....:::.   :|||||||||......|    .|...|     ||..|.| |..:..|.::|   
plant   810 AREAKKIG---SLKHPNIVPLRAYYWGP----REQERL-----LLSDYLR-GESLAMHLYETTPR 861

  Fly  1930 ------------LVLQAARAIEYLHRRRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYG 1982
                        :.::.|:.:.|||.|.:.:.:||..|:::         .||.|.|  :|.||.
plant   862 RYSPMSFSQRLKVAVEVAQCLLYLHDRAMPHGNLKPTNIIL---------SSPDNTV--RITDYC 915

  Fly  1983 ISRQTAPSGAKGFGGTE--------GFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQP-- 2037
            :.|...|||.     .|        |:.|||:...: :...|.|.|.::||:.:.|.::.|..  
plant   916 VHRLMTPSGV-----AEQILNMSALGYSAPELSSAS-KPIPTLKSDVYAFGVILMELLTRRSAGD 974

  Fly  2038 -FEGH-------ESIKECILEGSRPALTQRE----TQFPTCCLDLM------VLCWHEQPRRRPT 2084
             ..|.       :.::.|..||.|.....|:    .:|.....|.:      :|..:|:|..|..
plant   975 IISGQTGAVDLTDWVRLCDQEGRRMDCIDRDIAGGEEFSKGMEDALAVAIRCILSVNERPNIRQV 1039

  Fly  2085 ASQIVSI 2091
            ...:.||
plant  1040 LDHLTSI 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380 13/52 (25%)
LRR_8 729..788 CDD:290566 18/63 (29%)
leucine-rich repeat 731..754 CDD:275380 4/22 (18%)
LRR_8 855..933 CDD:290566 17/91 (19%)
leucine-rich repeat 855..901 CDD:275380 11/56 (20%)
leucine-rich repeat 902..924 CDD:275380 5/24 (21%)
leucine-rich repeat 925..949 CDD:275380 7/23 (30%)
P-loop_NTPase 993..1211 CDD:304359 36/229 (16%)
COR 1230..1471 CDD:292713 53/249 (21%)
STYKc 1796..2092 CDD:214568 76/339 (22%)
STKc_LRRK 1801..2095 CDD:270902 76/334 (23%)
AT5G10020NP_196564.1 PLN00113 26..1047 CDD:215061 288/1502 (19%)
leucine-rich repeat 80..100 CDD:275380 4/23 (17%)
leucine-rich repeat 101..124 CDD:275380 7/22 (32%)
leucine-rich repeat 125..148 CDD:275380 10/24 (42%)
leucine-rich repeat 149..172 CDD:275380 7/52 (13%)
leucine-rich repeat 173..196 CDD:275380 8/28 (29%)
leucine-rich repeat 225..250 CDD:275380 5/24 (21%)
leucine-rich repeat 251..273 CDD:275380 7/37 (19%)
leucine-rich repeat 274..320 CDD:275380 6/47 (13%)
leucine-rich repeat 321..342 CDD:275380 9/44 (20%)
leucine-rich repeat 368..392 CDD:275380 6/47 (13%)
leucine-rich repeat 393..436 CDD:275380 12/91 (13%)
leucine-rich repeat 437..469 CDD:275380 12/65 (18%)
leucine-rich repeat 470..493 CDD:275380 7/38 (18%)
leucine-rich repeat 494..515 CDD:275380 5/24 (21%)
leucine-rich repeat 518..539 CDD:275380 7/20 (35%)
leucine-rich repeat 540..560 CDD:275380 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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