DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT4G37250

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_195442.2 Gene:AT4G37250 / 829879 AraportID:AT4G37250 Length:768 Species:Arabidopsis thaliana


Alignment Length:645 Identity:135/645 - (20%)
Similarity:230/645 - (35%) Gaps:183/645 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 ALTAITRIDFSHNVLTS-IPQELFHLVSLRYLNVAQNKIT-DLPAPIGQTYGCPVLDELFLQDNQ 605
            :|..:..:|.|:|.... :|...|:...||:|:::.|.|: ::|:.||..:....|:   |.||.
plant    88 SLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLN---LSDNA 149

  Fly   606 LT-TLPAAIFHLPALSILDVSNNKLQ-QLPFDLWRAPKLRELNVAFNLLRDLPVPPMQTSSSLLS 668
            |. .||..:..|..|:::.:.||... ::|.. ||..:.  |:::.||:.. .:||.....||..
plant   150 LAGKLPTNLASLRNLTVVSLENNYFSGEIPGG-WRVVEF--LDLSSNLING-SLPPDFGGYSLQY 210

  Fly   669 LD-KLNLQSFEEPPS---NKPRNVTQQRLTHRNLWSATLDITDNDMKWQHEQDLGDGKTAGVGSS 729
            |: ..|..|.|.||.   |.|||||.. |:..||   |..|.|:.:....|.:...|.....|. 
plant   211 LNVSFNQISGEIPPEIGVNFPRNVTVD-LSFNNL---TGPIPDSPVFLNQESNFFSGNPGLCGE- 270

  Fly   730 QLSSLNIANNLFTSIPAALPCLAVNLTRLNMSYNSLRSMGHVTSYPATLKQLDL--SHNEISCWP 792
                           |...|||                   :.|.|:.:.:.|:  |...|:..|
plant   271 ---------------PTRNPCL-------------------IPSSPSIVSEADVPTSTPAIAAIP 301

  Fly   793 SL--------PRITESDPH----------------------------LLCYSCVQ---LPEGRDD 818
            :.        |...::||:                            |..|.|.:   :....:|
plant   302 NTIGSNPVTDPNSQQTDPNPRTGLRPGVIIGIVVGDIAGIGILAVIFLYIYRCKKNKIVDNNNND 366

  Fly   819 DYKTASSKGSSSSATSFRASVLKSVCRHRRHLRLEALRTLILADNLLTRIQLSTDDATTLFNESE 883
            ..:|.:...:.|:.:|..:|..:|    ||..:...||              ...:.|....|.|
plant   367 KQRTETDTITLSTFSSSSSSPEES----RRFRKWSCLR--------------KDPETTPSEEEDE 413

  Fly   884 DADWSVVGVNRSKVIFPNLSMLDMTNNCLKEIPASLHELSSLSVLNISGNVNITELPPHLGLLSR 948
            |.:....|.|.::....| .::.:......||...|.  :|..:|..:|:..:.:.....|.:..
plant   414 DDEDEESGYNANQRSGDN-KLVTVDGEKEMEIETLLK--ASAYILGATGSSIMYKAVLEDGRVFA 475

  Fly   949 LWNLNTRGCLLQEPLRSMIESKKHKTMDIVGYLKSIYEDAQPYARM--KLM---VVGVAGI---- 1004
            :..|...|.           |::.            ::|.:|:.|.  ||:   :|.:.|.    
plant   476 VRRLGENGL-----------SQRR------------FKDFEPHIRAIGKLVHPNLVRLCGFYWGT 517

  Fly  1005 -GKSTLLDLLRQGA--------GSGSSSSSHRSRASENHWAKRMGHARSTSR--------SHRHS 1052
             .|..:.|.:..|:        |.||||..|..      |..|:..|:..:|        .|.|.
plant   518 DEKLVIYDFVPNGSLVNPRYRKGGGSSSPYHLP------WETRLKIAKGIARGLAYLHEKKHVHG 576

  Fly  1053 SASSANISTVGVD----IGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQYFLSKR 1108
            :...:|| .:|.|    ||.:..|:......|:    .|.   ||....:::.:|..|.|
plant   577 NLKPSNI-LLGHDMEPKIGDFGLERLLTGETSY----IRA---GGSSRIFSSKRYTTSSR 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566 10/36 (28%)
leucine-rich repeat 547..569 CDD:275380 5/22 (23%)
LRR_8 569..629 CDD:290566 19/61 (31%)
leucine-rich repeat 570..595 CDD:275380 8/25 (32%)
leucine-rich repeat 596..618 CDD:275380 8/22 (36%)
leucine-rich repeat 619..641 CDD:275380 6/22 (27%)
leucine-rich repeat 642..676 CDD:275380 9/34 (26%)
leucine-rich repeat 677..730 CDD:275380 18/55 (33%)
LRR_8 729..788 CDD:290566 8/60 (13%)
leucine-rich repeat 731..754 CDD:275380 4/22 (18%)
LRR_8 855..933 CDD:290566 14/77 (18%)
leucine-rich repeat 855..901 CDD:275380 8/45 (18%)
leucine-rich repeat 902..924 CDD:275380 3/21 (14%)
leucine-rich repeat 925..949 CDD:275380 3/23 (13%)
P-loop_NTPase 993..1211 CDD:304359 34/146 (23%)
COR 1230..1471 CDD:292713
STYKc 1796..2092 CDD:214568
STKc_LRRK 1801..2095 CDD:270902
AT4G37250NP_195442.2 PLN00113 5..>250 CDD:215061 52/172 (30%)
leucine-rich repeat 70..84 CDD:275380
leucine-rich repeat 92..115 CDD:275380 5/22 (23%)
leucine-rich repeat 116..139 CDD:275380 8/22 (36%)
leucine-rich repeat 140..163 CDD:275380 8/25 (32%)
leucine-rich repeat 164..207 CDD:275380 11/46 (24%)
leucine-rich repeat 208..232 CDD:275380 8/23 (35%)
PKc_like 455..752 CDD:419665 42/211 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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