DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT4G26540

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_567748.5 Gene:AT4G26540 / 828760 AraportID:AT4G26540 Length:1091 Species:Arabidopsis thaliana


Alignment Length:1490 Identity:295/1490 - (19%)
Similarity:469/1490 - (31%) Gaps:606/1490 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   780 QLDLSHNEISCWPSLPRITESDP-HLLCYSCVQLPEGRDDDYKTASSKGSSSSATSFRASVLKSV 843
            ||::|.:..|.|    .:.::.| :.:...|.:..|..:...|....:| |...||.|:  ||| 
plant    38 QLNISGDAFSSW----HVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQG-SLPVTSLRS--LKS- 94

  Fly   844 CRHRRHLRLEALRTLILADNLLTRIQLSTDDATTLFNESEDADWSVVGVNRSKVIFPNLSMLDMT 908
                                 ||.:.||:.:.|.:. ..|..|            |..|.:||::
plant    95 ---------------------LTSLTLSSLNLTGVI-PKEIGD------------FTELELLDLS 125

  Fly   909 NNCLK-EIPASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKH 972
            :|.|. :||..:..|..|..|:::.|.....:|..:|.||.|..|    .|....|...|...  
plant   126 DNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVEL----MLFDNKLSGEIPRS-- 184

  Fly   973 KTMDIVGYLKSIYEDAQPYARMKLMVVGVAGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAK 1037
                 :|.||:                          |.:||.|        .:::...|..|  
plant   185 -----IGELKN--------------------------LQVLRAG--------GNKNLRGELPW-- 208

  Fly  1038 RMGHARSTSRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQ 1102
                                       :||.  ||.                             
plant   209 ---------------------------EIGN--CEN----------------------------- 215

  Fly  1103 YFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISPQKAEQLQQ 1167
                     ||:       .||||                            .|:|.:....:..
plant   216 ---------LVM-------LGLAE----------------------------TSLSGKLPASIGN 236

  Fly  1168 LIREKFIAI-------PDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPML 1225
            |.|.:.|||       |..::||.          |..|.|::|..|.|         .||     
plant   237 LKRVQTIAIYTSLLSGPIPDEIGY----------CTELQNLYLYQNSI---------SGS----- 277

  Fly  1226 LQKIPASYIALEDIVNVIACNLRAAGRDPVLDGEQYKRLVTEQMRLHNYKSFRDAAELQQATTWC 1290
               ||.:...|:.:.:::.......|:.|           ||   |.|                |
plant   278 ---IPTTIGGLKKLQSLLLWQNNLVGKIP-----------TE---LGN----------------C 309

  Fly  1291 HENGVLLHYDDATLRDYYFLDPQWLCDMLAHVVTVREINPFAPTGVMKLDDLQMLFRSV-QVQGN 1354
            .|                    .||.|...:::|     ...|....||::||.|..|| |:.| 
plant   310 PE--------------------LWLIDFSENLLT-----GTIPRSFGKLENLQELQLSVNQISG- 348

  Fly  1355 GNRSYIVSLLNKFEVA-LTWDSRTLL--IPSLLPSQEAAT-------------PNSGSTVKLSQR 1403
               :....|.|..::. |..|:..:.  ||||:.:..:.|             |.|     ||| 
plant   349 ---TIPEELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQS-----LSQ- 404

  Fly  1404 SRGRSLGCSVSQEVNLNNLIYEQRSAPSSSSSSASVSQGLRRILLMTYFPSGFWSRLITRILADE 1468
                   |...|.::|           |.:|.|.|:.:.:            |..|.:|::|   
plant   405 -------CRELQAIDL-----------SYNSLSGSIPKEI------------FGLRNLTKLL--- 436

  Fly  1469 QIIEAIRGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPFQKTERTQPFR 1533
                      :.|.|.:.| :...:...|  ||::                            .|
plant   437 ----------LLSNDLSGF-IPPDIGNCT--NLYR----------------------------LR 460

  Fly  1534 TDGNRFKLKQDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHMSQVAKLLALT 1598
            .:|||.              :.||......|..:|.   ||.:|.:|:..|.|.:|....|    
plant   461 LNGNRL--------------AGSIPSEIGNLKNLNF---VDISENRLVGSIPPAISGCESL---- 504

  Fly  1599 VDHIDLLLEDWYPS-LGT------RFVHTSE---------GRFLITRLV---------------- 1631
             :.:||.......| |||      :|:..|:         |..|:|.|.                
plant   505 -EFLDLHTNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEIPRE 568

  Fly  1632 --LCPRCLWKLQLQQNN---EPSDR--EVPP------VGCNR-----PSR-SSRRGAGAYFLHGV 1677
              .| |.|..|.|.:|:   |..|.  ::|.      :.|||     ||| |..:..|..   .|
plant   569 ISTC-RSLQLLNLGENDFSGEIPDELGQIPSLAISLNLSCNRFVGEIPSRFSDLKNLGVL---DV 629

  Fly  1678 GDPGEDGALNVFSAYLNATA------------------RRERRSEDSLGAGSDADSGVGPDSAGS 1724
            ......|.|||.:...|..:                  ||...|:.:...|....:.:......:
plant   630 SHNQLTGNLNVLTDLQNLVSLNISYNDFSGDLPNTPFFRRLPLSDLASNRGLYISNAISTRPDPT 694

  Fly  1725 SRNTSVDGHPGYHLPDNSNVCYAWMIEECILSVYNQSKISCPVHLEQSMAQLAPDVIFA---DIP 1786
            :||:||             |....:|...:.:|.....:...|....:..||..:.|.:   .:.
plant   695 TRNSSV-------------VRLTILILVVVTAVLVLMAVYTLVRARAAGKQLLGEEIDSWEVTLY 746

  Fly  1787 DKHTIPSECIIK----GSLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMA 1847
            .|.....:.|:|    .:::|.|:.|.|::..                   :|.|    ||    
plant   747 QKLDFSIDDIVKNLTSANVIGTGSSGVVYRIT-------------------IPSG----ES---- 784

  Fly  1848 FKVAVGK-WDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVGIC----IKPLALVLELAPLGG 1907
              :||.| |.::    ...|:   ..|:..|.:::|.|||.|:|.|    :|  .|..:..|.|.
plant   785 --LAVKKMWSKE----ESGAF---NSEIKTLGSIRHRNIVRLLGWCSNRNLK--LLFYDYLPNGS 838

  Fly  1908 LDALLRHYRRSGAHMGPHTFQTLVLQAARAIEYLHR---RRIIYRDLKSENVLVWELPQPHTEDS 1969
            |.:.| |....|..:.......:||..|.|:.|||.   ..||:.|:|:.|||:    .||.|. 
plant   839 LSSRL-HGAGKGGCVDWEARYDVVLGVAHALAYLHHDCLPTIIHGDVKAMNVLL----GPHFEP- 897

  Fly  1970 PRNLVHIKIADYGISRQTA-----------PSGAKGFGGTEGFMAPEIIRYNGEEEYTEKVDCFS 2023
                   .:||:|::|..:           |:......|:.|:||||   :...:..|||.|.:|
plant   898 -------YLADFGLARTISGYPNTGIDLAKPTNRPPMAGSYGYMAPE---HASMQRITEKSDVYS 952

  Fly  2024 FGMFIYENISLRQPFE-----GHESIK----------------ECILEGSRPALTQRETQFPTCC 2067
            :|:.:.|.::.:.|.:     |...:|                :..|:|...::.....|    .
plant   953 YGVVLLEVLTGKHPLDPDLPGGAHLVKWVRDHLAEKKDPSRLLDPRLDGRTDSIMHEMLQ----T 1013

  Fly  2068 LDLMVLCWHEQPRRRPTASQIVSILSAPECIHLLDVVAMPHSEKIVCGVFQSLVGMGDDE 2127
            |.:..||...:...||....:|::|:  |..|:  .|....:|||..|      |.|..|
plant  1014 LAVAFLCVSNKANERPLMKDVVAMLT--EIRHI--DVGRSETEKIKAG------GCGSKE 1063

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566 3/7 (43%)
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566 18/78 (23%)
leucine-rich repeat 855..901 CDD:275380 8/45 (18%)
leucine-rich repeat 902..924 CDD:275380 8/22 (36%)
leucine-rich repeat 925..949 CDD:275380 7/23 (30%)
P-loop_NTPase 993..1211 CDD:304359 32/224 (14%)
COR 1230..1471 CDD:292713 49/257 (19%)
STYKc 1796..2092 CDD:214568 79/339 (23%)
STKc_LRRK 1801..2095 CDD:270902 78/333 (23%)
AT4G26540NP_567748.5 PLN00113 32..1038 CDD:215061 284/1453 (20%)
leucine-rich repeat 119..142 CDD:275380 8/22 (36%)
leucine-rich repeat 143..166 CDD:275380 6/22 (27%)
leucine-rich repeat 167..190 CDD:275380 7/33 (21%)
leucine-rich repeat 191..215 CDD:275380 9/62 (15%)
leucine-rich repeat 216..239 CDD:275380 9/57 (16%)
leucine-rich repeat 264..287 CDD:275380 10/39 (26%)
leucine-rich repeat 288..311 CDD:275380 7/52 (13%)
leucine-rich repeat 312..335 CDD:275380 7/27 (26%)
leucine-rich repeat 336..359 CDD:275380 9/26 (35%)
leucine-rich repeat 360..381 CDD:275380 6/20 (30%)
leucine-rich repeat 384..407 CDD:275380 7/35 (20%)
leucine-rich repeat 408..455 CDD:275380 14/85 (16%)
leucine-rich repeat 456..479 CDD:275380 8/64 (13%)
leucine-rich repeat 480..503 CDD:275380 8/25 (32%)
leucine-rich repeat 504..526 CDD:275380 7/26 (27%)
leucine-rich repeat 527..550 CDD:275380 4/22 (18%)
leucine-rich repeat 551..572 CDD:275380 1/20 (5%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..623 CDD:275380 7/23 (30%)
leucine-rich repeat 624..646 CDD:275380 6/24 (25%)
leucine-rich repeat 647..670 CDD:275380 1/22 (5%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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