DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrrk and BAM3

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_193760.1 Gene:BAM3 / 827774 AraportID:AT4G20270 Length:992 Species:Arabidopsis thaliana


Alignment Length:1347 Identity:252/1347 - (18%)
Similarity:430/1347 - (31%) Gaps:539/1347 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   857 TLILADNL---LTRIQLSTDDATTLFNESEDADWSVVGVNRSKV--IFPNLSMLDMTNNCLK-EI 915
            |.:..|||   :||:.||              :.::.|....::  :.|:|..||:::|... |:
plant    67 TGVSCDNLNQSITRLDLS--------------NLNISGTISPEISRLSPSLVFLDISSNSFSGEL 117

  Fly   916 PASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMDIVGY 980
            |..::|||.|.|||||.||...|             |.|||                        
plant   118 PKEIYELSGLEVLNISSNVFEGE-------------LETRG------------------------ 145

  Fly   981 LKSIYEDAQPYARMKLMVVGVAGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAKRMGHARST 1045
                      :::|..:|.          ||                  |.:|.:...:..:.:|
plant   146 ----------FSQMTQLVT----------LD------------------AYDNSFNGSLPLSLTT 172

  Fly  1046 SRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQYFLSKRSL 1110
            .....|            :|:|           |::         |.|  |...::..|||.:.|
plant   173 LTRLEH------------LDLG-----------GNY---------FDG--EIPRSYGSFLSLKFL 203

  Fly  1111 YLVLWRISDGHKGLAELLQWLGN-IQARAPNSPVIIVGTHFDAVGESISPQKAEQLQQLIREKFI 1174
            .|                  .|| ::.|.||.                                 
plant   204 SL------------------SGNDLRGRIPNE--------------------------------- 217

  Fly  1175 AIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPMLLQKIPASYIALEDI 1239
                                   |.||..|..:........|.          .|||.:..|.::
plant   218 -----------------------LANITTLVQLYLGYYNDYRG----------GIPADFGRLINL 249

  Fly  1240 VNVIACNLRAAGRDPVLDGEQYKRLVTEQMRLHNYKS----FRDAAELQQATTWCHENGVLLHYD 1300
            |::...|....|..|.              .|.|.|:    |....||..:.             
plant   250 VHLDLANCSLKGSIPA--------------ELGNLKNLEVLFLQTNELTGSV------------- 287

  Fly  1301 DATLRDYYFLDPQWLCDM-------LAHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQGNGNRS 1358
                       |:.|.:|       |::.....|| |...:|:.||....:.|..:    :|...
plant   288 -----------PRELGNMTSLKTLDLSNNFLEGEI-PLELSGLQKLQLFNLFFNRL----HGEIP 336

  Fly  1359 YIVSLLNKFEVALTWDSR-TLLIPSLLPSQEAATPNSGSTVKLSQRSRGRSLGCSVSQEVNLNNL 1422
            ..||.|...::...|.:. |..|||.|.|       :|:.:::...:.            .|..|
plant   337 EFVSELPDLQILKLWHNNFTGKIPSKLGS-------NGNLIEIDLSTN------------KLTGL 382

  Fly  1423 IYEQRSAPSSSSSSASVSQGLRRILLMTYFPSG-----------FWSRLITRILADEQIIEAIRG 1476
            |.|          |....:.|:.::|...|..|           .|...:.:.....::.:.:  
plant   383 IPE----------SLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGL-- 435

  Fly  1477 VYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPFQKTERTQPFRTDGNRFKL 1541
            :|:.:....:..           |.:.||              |:|.::.         ||    
plant   436 IYLPNLSLLELQ-----------NNFLTG--------------EIPEEEA---------GN---- 462

  Fly  1542 KQDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHMSQVAKLLALTVDHIDLLL 1606
            .|....:.:|||::            .:|..:..:.|.|         :..::|.|..:.:...:
plant   463 AQFSSLTQINLSNN------------RLSGPIPGSIRNL---------RSLQILLLGANRLSGQI 506

  Fly  1607 EDWYPSLGTRFVHTSEGRFLITRLVLCPRCLWKLQLQQNNEPSDREVPP-----VGCNRPSRSSR 1666
            .....||                     :.|.|:.:.:||  ...:.||     :.......|..
plant   507 PGEIGSL---------------------KSLLKIDMSRNN--FSGKFPPEFGDCMSLTYLDLSHN 548

  Fly  1667 RGAGAYFLHGVGDPGEDGALNVFSAYLNATARRERRS-EDSLG---AGSDAD------SGVGPDS 1721
            :.:|..       |.:...:.:.: |||.:.....:| .:.||   :.:.||      ||..|.|
plant   549 QISGQI-------PVQISQIRILN-YLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTS 605

  Fly  1722 AGSS--RNTSVDGHP---GYHLPDNSNVCYAW--MIEECILSVYN---QSKISCPVHLEQSMAQL 1776
            ...|  .|||..|:|   |:    :||.|...  ..:..:|:..|   :.:||....|...:..|
plant   606 GQFSYFNNTSFLGNPFLCGF----SSNPCNGSQNQSQSQLLNQNNARSRGEISAKFKLFFGLGLL 666

  Fly  1777 APDVIFADIP--------------------------DKHTIPSECIIKGSLLGRGAFGFVFKANC 1815
            ...::|..:.                          .:|.:  ||:.:..::|:|..|.|:|...
plant   667 GFFLVFVVLAVVKNRRMRKNNPNLWKLIGFQKLGFRSEHIL--ECVKENHVIGKGGRGIVYKGVM 729

  Fly  1816 KVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQELAVLLTL 1880
            .     :.:.||:|.|..:..|: :.::.|.|                         |:..|..:
plant   730 P-----NGEEVAVKKLLTITKGS-SHDNGLAA-------------------------EIQTLGRI 763

  Fly  1881 KHPNIVPLVGICIKP--LALVLELAPLGGLDALLRHYRRSGAHMGPHTFQTLVLQAARAIEYLHR 1943
            :|.|||.|:..|...  ..||.|..|.|.|..:|  :.::|..:...|...:.|:||:.:.|||.
plant   764 RHRNIVRLLAFCSNKDVNLLVYEYMPNGSLGEVL--HGKAGVFLKWETRLQIALEAAKGLCYLHH 826

  Fly  1944 ---RRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYGISR-QTAPSGA----KGFGGTEG 2000
               ..||:||:||.|:|:          .|....|  :||:|::: ....:||    ....|:.|
plant   827 DCSPLIIHRDVKSNNILL----------GPEFEAH--VADFGLAKFMMQDNGASECMSSIAGSYG 879

  Fly  2001 FMAPEIIRYNGEEEYT----EKVDCFSFGMFIYENISLRQPFE--GHESI---------KECILE 2050
            ::|||.       .||    ||.|.:|||:.:.|.|:.|:|.:  |.|.|         ..|..:
plant   880 YIAPEY-------AYTLRIDEKSDVYSFGVVLLELITGRKPVDNFGEEGIDIVQWSKIQTNCNRQ 937

  Fly  2051 GSRPALTQRETQFPTC-CLDLM---VLCWHEQPRRRPTASQIVSILS 2093
            |....:.||.:..|.. .::|.   :||..|....|||..::|.::|
plant   938 GVVKIIDQRLSNIPLAEAMELFFVAMLCVQEHSVERPTMREVVQMIS 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566 25/81 (31%)
leucine-rich repeat 855..901 CDD:275380 9/48 (19%)
leucine-rich repeat 902..924 CDD:275380 8/22 (36%)
leucine-rich repeat 925..949 CDD:275380 9/23 (39%)
P-loop_NTPase 993..1211 CDD:304359 28/218 (13%)
COR 1230..1471 CDD:292713 46/263 (17%)
STYKc 1796..2092 CDD:214568 83/324 (26%)
STKc_LRRK 1801..2095 CDD:270902 84/322 (26%)
BAM3NP_193760.1 LRRNT_2 34..72 CDD:285463 1/4 (25%)
PLN00113 37..986 CDD:215061 252/1347 (19%)
leucine-rich repeat 79..102 CDD:275380 5/36 (14%)
leucine-rich repeat 103..126 CDD:275380 8/22 (36%)
leucine-rich repeat 127..151 CDD:275380 14/70 (20%)
leucine-rich repeat 152..175 CDD:275380 6/50 (12%)
leucine-rich repeat 176..199 CDD:275380 8/56 (14%)
leucine-rich repeat 200..223 CDD:275380 10/96 (10%)
leucine-rich repeat 224..248 CDD:275380 6/33 (18%)
leucine-rich repeat 249..272 CDD:275380 6/36 (17%)
LRR_RI 270..574 CDD:238064 68/453 (15%)
leucine-rich repeat 273..296 CDD:275380 6/46 (13%)
leucine-rich repeat 297..318 CDD:275380 4/21 (19%)
leucine-rich repeat 321..344 CDD:275380 6/26 (23%)
leucine-rich repeat 345..368 CDD:275380 7/29 (24%)
leucine-rich repeat 369..392 CDD:275380 5/44 (11%)
leucine-rich repeat 393..414 CDD:275380 4/20 (20%)
leucine-rich repeat 441..467 CDD:275380 8/63 (13%)
leucine-rich repeat 468..491 CDD:275380 6/43 (14%)
leucine-rich repeat 492..513 CDD:275380 2/20 (10%)
leucine-rich repeat 564..587 CDD:275380 6/23 (26%)
PKc_like 716..984 CDD:304357 83/319 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.