DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT4G08850

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_849538.2 Gene:AT4G08850 / 826456 AraportID:AT4G08850 Length:1045 Species:Arabidopsis thaliana


Alignment Length:1525 Identity:286/1525 - (18%)
Similarity:475/1525 - (31%) Gaps:590/1525 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 KLNLQSFEEPPS--NKPRN-----VTQQRLTHRNLWSATLDITDNDMKWQHEQDLGDGKTAGVGS 728
            |::|.||:|..:  .|||:     :....|:.....|||::..:..:||:      ...|....|
plant     9 KISLTSFKERMACKEKPRDLQVLLIISIVLSCSFAVSATVEEANALLKWK------STFTNQTSS 67

  Fly   729 SQLSS-LNIANNLFTSIPAALPCLAVNLTRLNMSYNSLRSMGHVTSYP----ATLKQLDLSHNEI 788
            |:||| :|...:.|.:....:.|...::.|||::...:.  |....:|    ..|..:|||.|..
plant    68 SKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIE--GTFEDFPFSSLPNLTFVDLSMNRF 130

  Fly   789 S-----CWPSLPRITESDPHLLCYSCVQL-----PEGRD----DDYKTASSK--GSSSSATSFRA 837
            |     .|....::...|     .|..||     ||..|    |......:|  ||..|...   
plant   131 SGTISPLWGRFSKLEYFD-----LSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIG--- 187

  Fly   838 SVLKSVCRHRRHLRLEALRTLILADNLLT-RIQLSTDDATTLFNESEDADWSVVGVNRSKV-IFP 900
                         ||..:..:.:.||||| .|..|..:.|.|.|.....: |:.|...|:: ..|
plant   188 -------------RLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFIN-SLSGSIPSEIGNLP 238

  Fly   901 NLSMLDM-TNNCLKEIPASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLR 964
            ||..|.: .||...:||:|...|.::::||:..|....|:||.                      
plant   239 NLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPE---------------------- 281

  Fly   965 SMIESKKHKTMDIVGYLKSIYEDAQPYARMKLMVVGVAGIGKSTLLDLLRQGAGSGSSSSSHRSR 1029
                                                   ||..|.||.|          |.|.::
plant   282 ---------------------------------------IGNMTALDTL----------SLHTNK 297

  Fly  1030 ASENHWAKRMGHARSTSRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQ 1094
            .:                                                  ||:.         
plant   298 LT--------------------------------------------------GPIP--------- 303

  Fly  1095 KEYYATHQYFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISP 1159
                                              ..||||:..|      ::..:.:.:..||.|
plant   304 ----------------------------------STLGNIKTLA------VLHLYLNQLNGSIPP 328

  Fly  1160 QKAEQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPM 1224
            :..|                    :..:|| :|||                           |..
plant   329 ELGE--------------------MESMID-LEIS---------------------------ENK 345

  Fly  1225 LLQKIPASYIALEDIVNVIACNLRAAGRDPVLDG-EQYKRLVTEQMRLHNYKSFRDAAELQQATT 1288
            |...:|.|:..|..:..:...:.:.:|  |:..| .....|...|:..:|:..|       ...|
plant   346 LTGPVPDSFGKLTALEWLFLRDNQLSG--PIPPGIANSTELTVLQLDTNNFTGF-------LPDT 401

  Fly  1289 WCHENGVLLHYDDATLRDYYFLDPQWLCDMLAHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQG 1353
            .| ..|.|   ::.||.|.:|..|                   .|   ..|.|.:.|.| |:.:|
plant   402 IC-RGGKL---ENLTLDDNHFEGP-------------------VP---KSLRDCKSLIR-VRFKG 439

  Fly  1354 NG-------------NRSYIVSLLNKF--EVALTWDSRTLLIPSLLPSQE---AATPNSGSTVKL 1400
            |.             ..::|....|.|  :::..|:....|:..:|.:..   |..|...:..:|
plant   440 NSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQL 504

  Fly  1401 SQRSRGRSLGCSVSQEVNLNNLIYEQRSAPSSSSSSASVSQ----GLRRILLMTYFPSGFWSRLI 1461
            ||            .:::.|.:..|   .|.|.|:...:|:    |.|   |....|||.  ||:
plant   505 SQ------------LDLSSNRITGE---LPESISNINRISKLQLNGNR---LSGKIPSGI--RLL 549

  Fly  1462 TRILADEQIIEAIRGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPFQKT 1526
            |.:                  :|.|.                                       
plant   550 TNL------------------EYLDL--------------------------------------- 557

  Fly  1527 ERTQPFRTDGNRFKLKQDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHMSQV 1591
                    ..|||.       |::..:.:::..:|:    :|:|:...|   |.:.|....:||:
plant   558 --------SSNRFS-------SEIPPTLNNLPRLYY----MNLSRNDLD---QTIPEGLTKLSQL 600

  Fly  1592 AKLLALTVDHIDLLLEDWYPSLGTRFVHTSEGRFLITRLVLCPRCLWKLQLQQNN-----EPSDR 1651
             ::|.|:.:.:|..:...:.||                     :.|.:|.|..||     .||.:
plant   601 -QMLDLSYNQLDGEISSQFRSL---------------------QNLERLDLSHNNLSGQIPPSFK 643

  Fly  1652 EVPPVGCNRPSRSSRRGAGAYFLHGVGDPGEDGALNVFSAYLNATARRERRSEDSLGAGSDADSG 1716
            ::..:.....|.::.:|           |..|.|     |:.||.......::|..|: .:...|
plant   644 DMLALTHVDVSHNNLQG-----------PIPDNA-----AFRNAPPDAFEGNKDLCGS-VNTTQG 691

  Fly  1717 VGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAW--------MIEEC--ILSVYNQSKISCPVHLEQ 1771
            :.|.|..||:.:.         .|.:.:.|..        ::..|  |...:.:.......|.:.
plant   692 LKPCSITSSKKSH---------KDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDS 747

  Fly  1772 SMAQLAPDVIFADIPDKHTIPSECIIKGS-------LLGRGAFGFVFKANCKVRGARSFKPVAMK 1829
            ........:...|    ..:..:.|||.:       |:|.|..|.|:||  |:..|    .:|:|
plant   748 ESGGETLSIFSFD----GKVRYQEIIKATGEFDPKYLIGTGGHGKVYKA--KLPNA----IMAVK 802

  Fly  1830 MLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVGICI- 1893
            .|......:.:..|....|                      ..|:..|..::|.|:|.|.|.|. 
plant   803 KLNETTDSSISNPSTKQEF----------------------LNEIRALTEIRHRNVVKLFGFCSH 845

  Fly  1894 -KPLALVLELAPLGGLDALLRHYRRS-----GAHMGPHTFQTLVLQAARAIEYLHRRR---IIYR 1949
             :...||.|....|.|..:|.:...:     |..:      .:|...|.|:.|:|..|   |::|
plant   846 RRNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRI------NVVKGVAHALSYMHHDRSPAIVHR 904

  Fly  1950 DLKSENVLVWELPQPHTEDSPRNLVHIKIADYGISRQTAP--SGAKGFGGTEGFMAPEIIRYNGE 2012
            |:.|.|:|:       .||     ...||:|:|.::...|  |......||.|::|||:..   .
plant   905 DISSGNILL-------GED-----YEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAY---A 954

  Fly  2013 EEYTEKVDCFSFGMFIYENISLRQPFE--------------GHESIKECILEGSRPALTQRETQF 2063
            .:.|||.|.:|||:...|.|....|.:              ..:||.:..|....|.:.:...:.
plant   955 MKVTEKCDVYSFGVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPEIKEEVLEI 1019

  Fly  2064 PTCCLDLMVLCWHEQPRRRPTASQIVSILS 2093
                |.:.:||.|..|:.|||...|.:..|
plant  1020 ----LKVALLCLHSDPQARPTMLSISTAFS 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380 2/4 (50%)
leucine-rich repeat 677..730 CDD:275380 13/59 (22%)
LRR_8 729..788 CDD:290566 17/63 (27%)
leucine-rich repeat 731..754 CDD:275380 6/23 (26%)
LRR_8 855..933 CDD:290566 25/80 (31%)
leucine-rich repeat 855..901 CDD:275380 13/47 (28%)
leucine-rich repeat 902..924 CDD:275380 8/22 (36%)
leucine-rich repeat 925..949 CDD:275380 6/23 (26%)
P-loop_NTPase 993..1211 CDD:304359 24/217 (11%)
COR 1230..1471 CDD:292713 53/263 (20%)
STYKc 1796..2092 CDD:214568 81/328 (25%)
STKc_LRRK 1801..2095 CDD:270902 79/319 (25%)
AT4G08850NP_849538.2 PLN00113 20..1035 CDD:215061 276/1502 (18%)
LRRNT_2 49..91 CDD:285463 10/47 (21%)
leucine-rich repeat 95..111 CDD:275380 4/17 (24%)
leucine-rich repeat 120..143 CDD:275380 7/22 (32%)
leucine-rich repeat 144..167 CDD:275380 7/27 (26%)
leucine-rich repeat 170..191 CDD:275380 6/36 (17%)
leucine-rich repeat 192..215 CDD:275380 7/22 (32%)
leucine-rich repeat 216..239 CDD:275380 5/23 (22%)
leucine-rich repeat 240..263 CDD:275380 8/22 (36%)
leucine-rich repeat 264..287 CDD:275380 8/83 (10%)
leucine-rich repeat 288..311 CDD:275380 11/125 (9%)
leucine-rich repeat 312..335 CDD:275380 5/48 (10%)
leucine-rich repeat 336..359 CDD:275380 10/50 (20%)
leucine-rich repeat 360..383 CDD:275380 3/24 (13%)
leucine-rich repeat 384..404 CDD:275380 6/27 (22%)
leucine-rich repeat 408..429 CDD:275380 8/45 (18%)
leucine-rich repeat 432..503 CDD:275380 13/71 (18%)
leucine-rich repeat 456..477 CDD:275380 4/20 (20%)
LRR_RI <500..>635 CDD:238064 42/255 (16%)
leucine-rich repeat 504..527 CDD:275380 8/37 (22%)
leucine-rich repeat 528..551 CDD:275380 9/27 (33%)
leucine-rich repeat 552..575 CDD:275380 6/94 (6%)
leucine-rich repeat 576..599 CDD:275380 6/29 (21%)
leucine-rich repeat 600..623 CDD:275380 5/44 (11%)
leucine-rich repeat 624..645 CDD:275380 7/20 (35%)
leucine-rich repeat 648..670 CDD:275380 6/37 (16%)
PKc_like 781..1037 CDD:304357 75/308 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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