DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT3G56370

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_191196.1 Gene:AT3G56370 / 824804 AraportID:AT3G56370 Length:964 Species:Arabidopsis thaliana


Alignment Length:1357 Identity:262/1357 - (19%)
Similarity:446/1357 - (32%) Gaps:518/1357 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   811 QLPEGRDDDYKTASSKGSSSSATSFRASVLK------SVCRHRRHLRLEALRTLILADNLLTRIQ 869
            :|....:|||...|..|......:.|.:.|.      |....|..|:|:.|..|.|::|.||.| 
plant    45 KLASWNEDDYTPCSWNGVKCHPRTNRVTELNLDGFSLSGRIGRGLLQLQFLHKLSLSNNNLTGI- 108

  Fly   870 LSTDDATTLFNESEDADWSVVGVNRSKVIFP--------NLSMLDMTNNCLK-EIPASLHELSSL 925
            ::.:...:|.| .:..|.|..|::.|   .|        :|.:|.:..|.|. :||.|:...|||
plant   109 INPNMLLSLVN-LKVVDLSSNGLSGS---LPDEFFRQCGSLRVLSLAKNKLTGKIPVSISSCSSL 169

  Fly   926 SVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMDIVGYLKSIYEDAQP 990
            :.||:|.|.....:|  ||    :|:|||...|  :..|:.:|.:..:.:|.:..|:::     .
plant   170 AALNLSSNGFSGSMP--LG----IWSLNTLRSL--DLSRNELEGEFPEKIDRLNNLRAL-----D 221

  Fly   991 YARMKLMVVGVAGIGKSTLLDL--LRQGAGSGSSSSSHRSRASENHWAKRMGHARSTSRSHRHSS 1053
            .:|.:|.....:.||...||..  |.:.:.|||..::.:..:                       
plant   222 LSRNRLSGPIPSEIGSCMLLKTIDLSENSLSGSLPNTFQQLS----------------------- 263

  Fly  1054 ASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATHQYFLSKRSLYLVLWRIS 1118
                            :|                          |:.:   |.|.:|        
plant   264 ----------------LC--------------------------YSLN---LGKNAL-------- 275

  Fly  1119 DGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISPQKAEQLQQLIREKFIA-IPDAEKI 1182
            :|     |:.:|:|.:::                         .|.| .|...||.. :||:   
plant   276 EG-----EVPKWIGEMRS-------------------------LETL-DLSMNKFSGQVPDS--- 306

  Fly  1183 GLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPMLLQKIPASYIALEDIVNVIACNL 1247
                                 :.|::....:.....|     |:..:|   ::..:.:|::|.:|
plant   307 ---------------------IGNLLALKVLNFSGNG-----LIGSLP---VSTANCINLLALDL 342

  Fly  1248 RA---AGRDPV---LDGEQYKRLVTEQMRLHNYKSFRDAAELQQATTWCHENGVLLHYDDAT--L 1304
            ..   .|:.|:   .||.                  ||.:.|:.              |::|  :
plant   343 SGNSLTGKLPMWLFQDGS------------------RDVSALKN--------------DNSTGGI 375

  Fly  1305 RDYYFLDPQWLCDMLAHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQGNGNRSYIVSLLNKFEV 1369
            :....||       |:|.....||.    .|:..|.||:    .:.:..|.....|.|.:.:.:.
plant   376 KKIQVLD-------LSHNAFSGEIG----AGLGDLRDLE----GLHLSRNSLTGPIPSTIGELKH 425

  Fly  1370 ALTWDSRTLLIPSLLPSQEAATPNSGSTVKLSQRSRGRSLGCSVSQEVNL-NNLIYEQRSAPSSS 1433
            ....|.....:..::|.:      :|..|.|              :|:.| |||:  :.:.|||.
plant   426 LSVLDVSHNQLNGMIPRE------TGGAVSL--------------EELRLENNLL--EGNIPSSI 468

  Fly  1434 SSSASVSQGLRRILLMTYFPSGFWSRLITRI---LADEQIIEAIRGVYMASQDYADFDLRTSLEQ 1495
            .:.:|:     |.|::::      ::|:..|   ||....:|.:        |.:..:|..:|.:
plant   469 KNCSSL-----RSLILSH------NKLLGSIPPELAKLTRLEEV--------DLSFNELAGTLPK 514

  Fly  1496 DTQWNLWQTGLALYYGPILIFKIWEVPFQKTERTQPFRTDGNRF-KLKQDGIWSDVNLSSSSILE 1559
            ... ||         |.:..|.|               :..:.| :|...||::.::.||     
plant   515 QLA-NL---------GYLHTFNI---------------SHNHLFGELPAGGIFNGLSPSS----- 549

  Fly  1560 VYFPLYEVNISQEVDDNERQLLAEIRPHMSQVAKLLALTVDHIDLLLEDWYPSLGTRFVHTSEGR 1624
                         |..|                                  |.:....|:.|...
plant   550 -------------VSGN----------------------------------PGICGAVVNKSCPA 567

  Fly  1625 FLITRLVLCPRCLWKLQLQQNNEPSDREVPPVGCNRP----SRSS--RRGAGAYFLHGVGDPGED 1683
            .....:||.|...:        :|.:.|:.|.|....    |.||  ...|.|..:.||      
plant   568 ISPKPIVLNPNATF--------DPYNGEIVPPGAGHKRILLSISSLIAISAAAAIVVGV------ 618

  Fly  1684 GALNVFSAYLNATARRERRSEDSLGAGSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAW 1748
                :....||.   |.|.|..|..|.....|| |.|   .||:.:.|.                
plant   619 ----IAITVLNL---RVRASTVSRSAVPLTFSG-GDD---FSRSPTTDS---------------- 656

  Fly  1749 MIEECILSVYNQSKISCPVHLEQSMAQLAPDVIFADIPDKHTIPSECIIKGSLLGRGAFGFVFKA 1813
                      |..|:                |:|:..||..|.....:.|...||||.||.|::.
plant   657 ----------NSGKL----------------VMFSGEPDFSTGTHALLNKDCELGRGGFGAVYRT 695

  Fly  1814 NCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQELAVLL 1878
                 ..|...|||:|.|         ..|:|:                  |:.....:|:..|.
plant   696 -----VIRDGYPVAIKKL---------TVSSLV------------------KSQDEFEREVKKLG 728

  Fly  1879 TLKHPNIVPLVGI--CIKPLALVLELAPLGGLDALLRHYRRSGAHMGPHTFQTLVLQAARAIEYL 1941
            .|:|.|:|.|.|.  ......|:.|....|.|...|.......:.:..:....::|..|:.:.||
plant   729 KLRHSNLVKLEGYYWTTSLQLLIYEFLSGGSLYKQLHEAPGGNSSLSWNDRFNIILGTAKCLAYL 793

  Fly  1942 HRRRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYGISR--------------QTAPSGA 1992
            |:..||:.::||.|||:....:|            |:.|||::|              |:|    
plant   794 HQSNIIHYNIKSSNVLLDSSGEP------------KVGDYGLARLLPMLDRYVLSSKIQSA---- 842

  Fly  1993 KGFGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQPFEGHES--------IKECIL 2049
                  .|:||||.....  .:.|||.|.:.||:.:.|.::.::|.|..|.        ::|.:.
plant   843 ------LGYMAPEFACRT--VKITEKCDVYGFGVLVLEVVTGKKPVEYMEDDVVVLCDMVREALE 899

  Fly  2050 EGSR-----PALTQRETQFP----TCCLDLMVLCWHEQPRRRPTASQIVSILSAPEC 2097
            :|..     |.|   :.:||    ...:.|.::|..:.|..||...:.|:||....|
plant   900 DGRADECIDPRL---QGKFPVEEAVAVIKLGLICTSQVPSSRPHMGEAVNILRMIRC 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566 27/86 (31%)
leucine-rich repeat 855..901 CDD:275380 14/53 (26%)
leucine-rich repeat 902..924 CDD:275380 7/22 (32%)
leucine-rich repeat 925..949 CDD:275380 8/23 (35%)
P-loop_NTPase 993..1211 CDD:304359 27/220 (12%)
COR 1230..1471 CDD:292713 46/252 (18%)
STYKc 1796..2092 CDD:214568 77/328 (23%)
STKc_LRRK 1801..2095 CDD:270902 78/326 (24%)
AT3G56370NP_191196.1 PLN00113 32..948 CDD:215061 259/1350 (19%)
leucine-rich repeat 71..94 CDD:275380 5/22 (23%)
leucine-rich repeat 95..119 CDD:275380 8/24 (33%)
leucine-rich repeat 120..144 CDD:275380 5/26 (19%)
leucine-rich repeat 145..168 CDD:275380 7/22 (32%)
leucine-rich repeat 169..192 CDD:275380 10/28 (36%)
leucine-rich repeat 193..216 CDD:275380 4/24 (17%)
leucine-rich repeat 217..240 CDD:275380 5/27 (19%)
leucine-rich repeat 241..288 CDD:275380 14/127 (11%)
leucine-rich repeat 265..287 CDD:275378 9/63 (14%)
leucine-rich repeat 289..312 CDD:275380 8/47 (17%)
leucine-rich repeat 313..336 CDD:275380 3/30 (10%)
leucine-rich repeat 337..377 CDD:275380 11/71 (15%)
leucine-rich repeat 378..401 CDD:275380 8/33 (24%)
leucine-rich repeat 402..425 CDD:275380 4/26 (15%)
leucine-rich repeat 426..449 CDD:275380 3/28 (11%)
leucine-rich repeat 450..473 CDD:275380 9/38 (24%)
leucine-rich repeat 474..497 CDD:275380 6/33 (18%)
leucine-rich repeat 498..521 CDD:275380 6/40 (15%)
leucine-rich repeat 522..545 CDD:275380 6/37 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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