DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT3G24240

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_189066.1 Gene:AT3G24240 / 822011 AraportID:AT3G24240 Length:1141 Species:Arabidopsis thaliana


Alignment Length:1471 Identity:293/1471 - (19%)
Similarity:487/1471 - (33%) Gaps:542/1471 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   712 WQHEQDLGDGKTAGVGSSQLSSLNIANNLFTSIPAALPCLAVNLTRLNMSYNSLRSMGHVT---- 772
            |.|.           .|...|||::.|  :.||... ||       .|.::.:..|.|.:|    
plant    45 WLHS-----------SSPTPSSLSLFN--WNSIDNT-PC-------NNWTFITCSSQGFITDIDI 88

  Fly   773 -SYPATLKQLDLSHNEISCWPSLPRITESDPHLLCYSCVQLPEGRDDDYKTASSKGSSSSATSFR 836
             |.|.   ||.|..| :..:.||.::|.|..:|    ...|||...|   ....|....|:....
plant    89 ESVPL---QLSLPKN-LPAFRSLQKLTISGANL----TGTLPESLGD---CLGLKVLDLSSNGLV 142

  Fly   837 ASVLKSVCRHRRHLRLEALRTLILADNLLT-RIQLSTDDATTLFNESEDADWSVVGVNRSKVIFP 900
            ..:..|:.      :|..|.||||..|.|| :|.......:.|               :|.::|.
plant   143 GDIPWSLS------KLRNLETLILNSNQLTGKIPPDISKCSKL---------------KSLILFD 186

  Fly   901 NLSMLDMTNNCLKEIPASLHELSSLSVLNISGNVNIT-ELPPHLGLLSRLWNLNTRGCLLQEPLR 964
            ||    :|.:    ||..|.:||.|.|:.|.||..|: ::|..:|..|.|..|......:...|.
plant   187 NL----LTGS----IPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLP 243

  Fly   965 SMI-ESKKHKTMDIVGYLKSIYEDAQPYARMKLMVVG--VAGIGK-STLLDL-LRQGAGSGSSSS 1024
            |.: :.||.:|:       |||         ..|:.|  .:.:|. |.|:|| |.:.:.|||   
plant   244 SSLGKLKKLETL-------SIY---------TTMISGEIPSDLGNCSELVDLFLYENSLSGS--- 289

  Fly  1025 SHRSRASENHWAKRMGHARSTSRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTW 1089
                                                 :..:||.                     
plant   290 -------------------------------------IPREIGQ--------------------- 296

  Fly  1090 DFGGQKEYYATHQYFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVG 1154
                           |:|                |.:|..|        .||   :||       
plant   297 ---------------LTK----------------LEQLFLW--------QNS---LVG------- 312

  Fly  1155 ESISPQKAEQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPG 1219
                                .||  |:||          :|..|..|.|..|::         .|
plant   313 --------------------GIP--EEIG----------NCSNLKMIDLSLNLL---------SG 336

  Fly  1220 SKEPMLLQKIPASYIALEDIVNVIACNLRAAGRDPV------------LDGEQYKRLVTEQMRLH 1272
            |        ||:|...|..:...:..:.:.:|..|.            ||..|...|:..::   
plant   337 S--------IPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSEL--- 390

  Fly  1273 NYKSFRDAAELQQAT---TWCH--ENGVLLHYDDATLRDYYFLDPQWLCDMLAHVVTVREINPFA 1332
                    ..|.:.|   .|.:  |..:.....|.|             |:.|..::...:....
plant   391 --------GTLTKLTLFFAWSNQLEGSIPPGLADCT-------------DLQALDLSRNSLTGTI 434

  Fly  1333 PTGVMKLDDL-QMLFRSVQVQG-----NGNRSYIVSLLNKFEVALTWDSRTLLIPSLLPSQEAAT 1391
            |:|:..|.:| ::|..|..:.|     .||.|.:|.|      .|.::..|..|||         
plant   435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRL------RLGFNRITGEIPS--------- 484

  Fly  1392 PNSGSTVKL------SQRSRGR---SLG-CSVSQEVNLNNLIYEQRSAPSSSSSSASVSQGLRRI 1446
             ..||..|:      |.|..|:   .:| ||..|.::|:|     .|...|..:..|...||:.:
plant   485 -GIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSN-----NSLEGSLPNPVSSLSGLQVL 543

  Fly  1447 LLMTYFPSGFWSRLITRILADEQIIEAIRGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYG 1511
            .:.....||.....:.|:::..::|        .|::.....:.|||...:...|...|.....|
plant   544 DVSANQFSGKIPASLGRLVSLNKLI--------LSKNLFSGSIPTSLGMCSGLQLLDLGSNELSG 600

  Fly  1512 PILIFKIWEVPFQKTERTQPFRTDGNRFKLKQDGIWSDVNLSSSSIL-EVYFPLYEVNISQEVDD 1575
                    |:|.:..:               .:.:...:||||:.:. ::...:..:|....:|.
plant   601 --------EIPSELGD---------------IENLEIALNLSSNRLTGKIPSKIASLNKLSILDL 642

  Fly  1576 NERQLLAEIRPHMSQVAKLLALTVDHIDLLLEDWYPSLGTRFVHTSEGRFLITRLVLCPRCLWKL 1640
            :...|..::.| ::.:..|::|.:.                  :.|...:|...           
plant   643 SHNMLEGDLAP-LANIENLVSLNIS------------------YNSFSGYLPDN----------- 677

  Fly  1641 QLQQNNEPSDREVPPVGCNRPSRSS----RRGAGAYFLHGVGDPGEDG-------------ALNV 1688
            :|.:...|.|.|.....|:....|.    |:|      :|:||.|:..             .|.|
plant   678 KLFRQLSPQDLEGNKKLCSSTQDSCFLTYRKG------NGLGDDGDASRTRKLRLTLALLITLTV 736

  Fly  1689 FSAYLNATA-RRERRSEDSLGAGSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAWMIEE 1752
            ....|.|.| .|.||:.|     ::.||.:|.                         .|.|..  
plant   737 VLMILGAVAVIRARRNID-----NERDSELGE-------------------------TYKWQF-- 769

  Fly  1753 CILSVYNQSKISCPVH-LEQSMAQLAPDVIFADIPDKHTIPSECIIKGSLLGRGAFGFVFKANCK 1816
                        .|.. |..|:.|:.                .|:::.:::|:|..|.|::|:  
plant   770 ------------TPFQKLNFSVDQII----------------RCLVEPNVIGKGCSGVVYRAD-- 804

  Fly  1817 VRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQELAVLLTLK 1881
               ..:.:.:|:|.|.|........|..         |..||...          .|:..|.|::
plant   805 ---VDNGEVIAVKKLWPAMVNGGHDEKT---------KNVRDSFS----------AEVKTLGTIR 847

  Fly  1882 HPNIVPLVGIC--IKPLALVLELAPLGGLDALLRHYRRSGAHMGPHTFQTLVLQAARAIEYLHR- 1943
            |.|||..:|.|  .....|:.:..|.|.|.:|| |.|| |:.:.......::|.||:.:.|||. 
plant   848 HKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLL-HERR-GSSLDWDLRYRILLGAAQGLAYLHHD 910

  Fly  1944 --RRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYGISRQTAPSGAKG-----FGGTEGF 2001
              ..|::||:|:.|:|:....:|:            |||:|::: ....|..|     ..|:.|:
plant   911 CLPPIVHRDIKANNILIGLDFEPY------------IADFGLAK-LVDEGDIGRCSNTVAGSYGY 962

  Fly  2002 MAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQPF---------------EGHESIKECILEG 2051
            :|||   |....:.|||.|.:|:|:.:.|.::.:||.               :...|::  :|:.
plant   963 IAPE---YGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTVPEGIHLVDWVRQNRGSLE--VLDS 1022

  Fly  2052 SRPALTQRETQFPTCCLDLMVLCWHEQPRRRPTASQIVSIL 2092
            :..:.|:.|.......|...:||.:..|..|||...:.::|
plant  1023 TLRSRTEAEADEMMQVLGTALLCVNSSPDERPTMKDVAAML 1063

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380 3/17 (18%)
LRR_8 729..788 CDD:290566 18/63 (29%)
leucine-rich repeat 731..754 CDD:275380 8/22 (36%)
LRR_8 855..933 CDD:290566 23/78 (29%)
leucine-rich repeat 855..901 CDD:275380 12/46 (26%)
leucine-rich repeat 902..924 CDD:275380 6/21 (29%)
leucine-rich repeat 925..949 CDD:275380 9/24 (38%)
P-loop_NTPase 993..1211 CDD:304359 32/221 (14%)
COR 1230..1471 CDD:292713 54/273 (20%)
STYKc 1796..2092 CDD:214568 77/320 (24%)
STKc_LRRK 1801..2095 CDD:270902 78/317 (25%)
AT3G24240NP_189066.1 PLN03150 <59..170 CDD:178695 36/137 (26%)
leucine-rich repeat 107..130 CDD:275380 8/29 (28%)
PLN00113 131..1064 CDD:215061 263/1353 (19%)
leucine-rich repeat 131..154 CDD:275380 4/28 (14%)
leucine-rich repeat 155..178 CDD:275380 9/22 (41%)
leucine-rich repeat 179..202 CDD:275380 10/45 (22%)
leucine-rich repeat 203..251 CDD:275380 13/47 (28%)
leucine-rich repeat 252..275 CDD:275380 7/38 (18%)
leucine-rich repeat 276..299 CDD:275380 10/98 (10%)
leucine-rich repeat 300..323 CDD:275380 13/72 (18%)
leucine-rich repeat 324..347 CDD:275380 10/39 (26%)
leucine-rich repeat 348..371 CDD:275380 2/22 (9%)
leucine-rich repeat 372..395 CDD:275380 5/33 (15%)
leucine-rich repeat 396..419 CDD:275380 5/35 (14%)
leucine-rich repeat 420..443 CDD:275380 4/22 (18%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
leucine-rich repeat 468..489 CDD:275380 8/36 (22%)
leucine-rich repeat 492..515 CDD:275380 5/22 (23%)
leucine-rich repeat 516..539 CDD:275380 6/27 (22%)
leucine-rich repeat 540..587 CDD:275380 9/54 (17%)
leucine-rich repeat 588..608 CDD:275380 5/27 (19%)
leucine-rich repeat 612..636 CDD:275380 4/23 (17%)
leucine-rich repeat 660..683 CDD:275380 5/51 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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