DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT3G23750

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_189017.1 Gene:AT3G23750 / 821957 AraportID:AT3G23750 Length:928 Species:Arabidopsis thaliana


Alignment Length:934 Identity:192/934 - (20%)
Similarity:314/934 - (33%) Gaps:311/934 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1351 VQGNGNRSYIVSLLNKFEVALTWDSRTLLIPSLLPSQEAATPN------SG---STVKLSQRSRG 1406
            |:..|.|...:||.:|   :||    ..:.|.:....|..:.:      ||   |..|||     
plant    56 VRCTGGRVTTISLADK---SLT----GFIAPEISTLSELKSVSIQRNKLSGTIPSFAKLS----- 108

  Fly  1407 RSLGCSVSQEVNL--NNLIYEQRSAPSSSSSSASVSQGLRRILLMTYFPSGFW-SRLITRILADE 1468
             ||     ||:.:  ||.:..:..|.:..:|...:|......:....|||... |..:|.|..|.
plant   109 -SL-----QEIYMDENNFVGVETGAFAGLTSLQILSLSDNNNITTWSFPSELVDSTSLTTIYLDN 167

  Fly  1469 --------QIIEAIRGVYMASQDYADFD--LRTSLEQDTQWNLW-----------------QTGL 1506
                    .|.:::..:......|.:..  |..||.:.:..|||                 .|.|
plant   168 TNIAGVLPDIFDSLASLQNLRLSYNNITGVLPPSLGKSSIQNLWINNQDLGMSGTIEVLSSMTSL 232

  Fly  1507 AL-------YYGPILIFKIWEVPFQKTERTQPFRTDGNRFKLK-QD----GIWSDVNLSSSSILE 1559
            :.       ::|||       ....|:|         |.|.|: :|    ||.....|:.:|:..
plant   233 SQAWLHKNHFFGPI-------PDLSKSE---------NLFDLQLRDNDLTGIVPPTLLTLASLKN 281

  Fly  1560 VY---------FPLYEVNISQEVDDNERQLLAEIRPHMS---QVAKLLALT--VDHIDLLLEDWY 1610
            :.         .||:...:...:|.|   :....:...|   ||..|||:.  :.:..:|.|.|.
plant   282 ISLDNNKFQGPLPLFSPEVKVTIDHN---VFCTTKAGQSCSPQVMTLLAVAGGLGYPSMLAESWQ 343

  Fly  1611 -------------PSLGTRFVHTSEGRFLITRLV----------------------LCPR---CL 1637
                         .|.|...|..:.|:...|..:                      :.|:   .:
plant   344 GDDACSGWAYVSCDSAGKNVVTLNLGKHGFTGFISPAIANLTSLKSLYLNGNDLTGVIPKELTFM 408

  Fly  1638 WKLQL-QQNNEPSDREVPP---------------VGCNRPSRSSRRGAGAYFLHGVGDPGEDG-- 1684
            ..||| ..:|.....|:|.               :|.|....||....||     .|.||...  
plant   409 TSLQLIDVSNNNLRGEIPKFPATVKFSYKPGNALLGTNGGDGSSPGTGGA-----SGGPGGSSGG 468

  Fly  1685 -------------ALNVFSAYLNAT----------ARRERRSEDSLG--AGSDADSGVGPDSAGS 1724
                         |:.||.|.|...          .|..|...:.:|  ..|||.|..|..:.|.
plant   469 GGSKVGVIVGVIVAVLVFLAILGFVVYKFVMKRKYGRFNRTDPEKVGKILVSDAVSNGGSGNGGY 533

  Fly  1725 SRNTSVDGHPGYHLPDNSNVCYAWMIEECILSVYNQSKISCPVH-LEQSMAQLAPDVIFADIPDK 1788
            :.....:.....:.|.:.:....:::|        ...::.|:. |.|.....:.|         
plant   534 ANGHGANNFNALNSPSSGDNSDRFLLE--------GGSVTIPMEVLRQVTNNFSED--------- 581

  Fly  1789 HTIPSECIIKGSLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAVG 1853
                       ::||||.||.|:               |.::........:..|.|      |:|
plant   582 -----------NILGRGGFGVVY---------------AGELHDGTKTAVKRMECA------AMG 614

  Fly  1854 KWDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVGICI--KPLALVLELAPLGGLDALLRHYR 1916
            .          |.....:.|:|||..::|.::|.|:|.|:  ....||.|..|.|.|...|..:.
plant   615 N----------KGMSEFQAEIAVLTKVRHRHLVALLGYCVNGNERLLVYEYMPQGNLGQHLFEWS 669

  Fly  1917 RSGAHMGPHTFQ---TLVLQAARAIEYLH---RRRIIYRDLKSENVLVWELPQPHTEDSPRNLVH 1975
            ..|  ..|.|::   ::.|..||.:||||   ::..|:||||..|:|:       .:|     :.
plant   670 ELG--YSPLTWKQRVSIALDVARGVEYLHSLAQQSFIHRDLKPSNILL-------GDD-----MR 720

  Fly  1976 IKIADYGISRQTAPSGAKG----FGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQ 2036
            .|:||:|:.: .||.|...    ..||.|::|||   |......|.|||.::||:.:.|.::.|:
plant   721 AKVADFGLVK-NAPDGKYSVETRLAGTFGYLAPE---YAATGRVTTKVDVYAFGVVLMEILTGRK 781

  Fly  2037 PFE-------------------GHESIKECI---LEGSRPALTQRETQFPTCCLDLMVLCWHEQP 2079
            ..:                   ..|:|.:.:   ||.....:   |:.:...  :|...|...:|
plant   782 ALDDSLPDERSHLVTWFRRILINKENIPKALDQTLEADEETM---ESIYRVA--ELAGHCTAREP 841

  Fly  2080 RRRPTASQIVSILS------APEC 2097
            ::||.....|::|.      .|.|
plant   842 QQRPDMGHAVNVLGPLVEKWKPSC 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566
leucine-rich repeat 855..901 CDD:275380
leucine-rich repeat 902..924 CDD:275380
leucine-rich repeat 925..949 CDD:275380
P-loop_NTPase 993..1211 CDD:304359
COR 1230..1471 CDD:292713 32/139 (23%)
STYKc 1796..2092 CDD:214568 80/329 (24%)
STKc_LRRK 1801..2095 CDD:270902 81/333 (24%)
AT3G23750NP_189017.1 PLN00113 24..845 CDD:215061 186/912 (20%)
leucine-rich repeat 63..86 CDD:275380 6/29 (21%)
leucine-rich repeat 87..109 CDD:275380 6/27 (22%)
leucine-rich repeat 110..133 CDD:275380 6/27 (22%)
leucine-rich repeat 134..159 CDD:275380 5/24 (21%)
leucine-rich repeat 160..183 CDD:275380 4/22 (18%)
leucine-rich repeat 184..254 CDD:275380 14/85 (16%)
leucine-rich repeat 232..252 CDD:275380 4/26 (15%)
leucine-rich repeat 255..278 CDD:275380 6/22 (27%)
leucine-rich repeat 279..362 CDD:275380 15/85 (18%)
leucine-rich repeat 363..386 CDD:275380 3/22 (14%)
leucine-rich repeat 387..410 CDD:275380 1/22 (5%)
STKc_IRAK 584..857 CDD:270968 81/326 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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