DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and RPK2

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_186862.3 Gene:RPK2 / 821240 AraportID:AT3G02130 Length:1151 Species:Arabidopsis thaliana


Alignment Length:1640 Identity:302/1640 - (18%)
Similarity:496/1640 - (30%) Gaps:711/1640 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   553 SHNVLT-SIPQELFHLVSLRYLNVAQNKITDLPAPIGQTYGCPVLDELFLQDNQLT-TLPAAIFH 615
            :|..|. ::|..:..|..||.|::..|..:. ..|:| .:|...|:.|.|:.|.:| :||.....
plant   128 NHGALAGNLPSVIMSLTGLRVLSLPFNSFSG-EIPVG-IWGMEKLEVLDLEGNLMTGSLPDQFTG 190

  Fly   616 LPALSILDVSNNKLQ-QLPFDLWRAPKLRELNVAFNLLRDLPVPPMQTSSSLLSLDKLNLQSFEE 679
            |..|.::::..|::. ::|..|....||..||:..|.|.. .||.......:|.|....||    
plant   191 LRNLRVMNLGFNRVSGEIPNSLQNLTKLEILNLGGNKLNG-TVPGFVGRFRVLHLPLNWLQ---- 250

  Fly   680 PPSNKPRNVTQQ--RLTHRNLWSATLDITDNDMKWQHEQDLGDGKTAGVGSSQLSSLNIANNLFT 742
              .:.|:::...  :|.|       ||::.|.:..:..:.|  ||.||:.|..|    ..|.|..
plant   251 --GSLPKDIGDSCGKLEH-------LDLSGNFLTGRIPESL--GKCAGLRSLLL----YMNTLEE 300

  Fly   743 SIPAALPCLAVNLTRLNMSYNSLRSMGHVTSYPATLKQLDLSHNEISCWPSLPRITESDPHLLCY 807
            :||              :.:.||:.          |:.||:|.|.:|  ..||            
plant   301 TIP--------------LEFGSLQK----------LEVLDVSRNTLS--GPLP------------ 327

  Fly   808 SCVQLPEGRDDDYKTASSKGSSSSATSFRASVLKSVCRHRRHLRLEALRTLILADNLLTRIQLST 872
              |:|              |:.||.:....|.|.:|......:|.||                ..
plant   328 --VEL--------------GNCSSLSVLVLSNLYNVYEDINSVRGEA----------------DL 360

  Fly   873 DDATTLFNESEDADW-------SVVGVNRSKVI----------FP-------NLSMLDMTNNCLK 913
            .....|.:.:||.::       .:..:.:.|::          ||       ||.|:::..|..|
plant   361 PPGADLTSMTEDFNFYQGGIPEEITRLPKLKILWVPRATLEGRFPGDWGSCQNLEMVNLGQNFFK 425

  Fly   914 -EIPASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMDI 977
             |||..|.:..:|.:|::|.|              ||     .|.||:|                
plant   426 GEIPVGLSKCKNLRLLDLSSN--------------RL-----TGELLKE---------------- 455

  Fly   978 VGYLKSIYEDAQPYARMKLMVVGVAGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAKRMGHA 1042
                            :.:..:.|..:|.::|..::.....:.:|           |....:...
plant   456 ----------------ISVPCMSVFDVGGNSLSGVIPDFLNNTTS-----------HCPPVVYFD 493

  Fly  1043 RSTSRSHRHSSA-------SSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTW---DFGGQKEY 1097
            |.:..|:...|:       ..|.:.|..:|:|:           ..||.||..:   :|.|..:.
plant   494 RFSIESYSDPSSVYLSFFTEKAQVGTSLIDLGS-----------DGGPAVFHNFADNNFTGTLKS 547

  Fly  1098 YATHQYFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISPQKA 1162
            ....|..|.||..|:    .|.|...|..  |:.||:.........:.|...|:.:...| ||  
plant   548 IPLAQERLGKRVSYI----FSAGGNRLYG--QFPGNLFDNCDELKAVYVNVSFNKLSGRI-PQ-- 603

  Fly  1163 EQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPMLLQ 1227
                                ||..:..|::|...:::              |:..|         
plant   604 --------------------GLNNMCTSLKILDASVN--------------QIFGP--------- 625

  Fly  1228 KIPASYIALEDIVNVIACNL---RAAGRDPVLDGEQYKRLVTEQMRLHNYKSFRDAAELQQATTW 1289
             ||.|   |.|:.:::|.||   :..|:.|...|::...|....:..:|.     ..::.|:...
plant   626 -IPTS---LGDLASLVALNLSWNQLQGQIPGSLGKKMAALTYLSIANNNL-----TGQIPQSFGQ 681

  Fly  1290 CHENGVLLHYDDATLRDYYFLDPQWLCDMLAHVVTVREINPFAPTGVMKLDDLQMLFRSVQVQGN 1354
            .|...||                    |:.::     .::...|...:.|.:|.:|         
plant   682 LHSLDVL--------------------DLSSN-----HLSGGIPHDFVNLKNLTVL--------- 712

  Fly  1355 GNRSYIVSLLNKFEVALTWDSRTLLIPSLLPSQEAATPNSGSTVKLSQRSRGRSLGCSVSQEVNL 1419
                    |||.                                                     
plant   713 --------LLNN----------------------------------------------------- 716

  Fly  1420 NNLIYEQRSAPSSSSSSASVSQGLRRILLMTYFPSGFWSRLITRILADEQIIEAIRGVYMASQDY 1484
            |||     |.|                     .||||                         ..:
plant   717 NNL-----SGP---------------------IPSGF-------------------------ATF 730

  Fly  1485 ADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPFQKTERTQPFRTDGNRFKLKQDGIWSD 1549
            |.|::.::       ||        .||        || .....|:.....||.:          
plant   731 AVFNVSSN-------NL--------SGP--------VP-STNGLTKCSTVSGNPY---------- 761

  Fly  1550 VNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHMSQVAKLLALTVDHIDLLLEDWYPSLG 1614
                                              :||     ..:.:||.           ||..
plant   762 ----------------------------------LRP-----CHVFSLTT-----------PSSD 776

  Fly  1615 TRFVHTSEGRFLITRLVLCPRCLWKLQLQQNNEPSDREVPPVGCNRPSRSSRRGAGAYFLHGVGD 1679
            :|   .|.|                     ::...|....||. |.||:|               
plant   777 SR---DSTG---------------------DSITQDYASSPVE-NAPSQS--------------- 801

  Fly  1680 PGEDG--ALNVFSAYLNATARRERRSEDSLGAGSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNS 1742
            ||:.|  :|.:.|.                              |.:|...||            
plant   802 PGKGGFNSLEIASI------------------------------ASASAIVSV------------ 824

  Fly  1743 NVCYAWMIEECILSVYN-----QSKISCPVHLEQSMAQLAPDVIFADIPDKHTIPSECIIKG--- 1799
                  :|...||..|.     :|||......|.:|        |.||....|..:.....|   
plant   825 ------LIALVILFFYTRKWHPKSKIMATTKREVTM--------FMDIGVPITFDNVVRATGNFN 875

  Fly  1800 --SLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFK-VAVGKWDRDPLQ 1861
              :|:|.|.||..:|                         |...:..::|.| :::|::......
plant   876 ASNLIGNGGFGATYK-------------------------AEISQDVVVAIKRLSIGRFQGVQQF 915

  Fly  1862 HSCKAYCTARQELAVLLTLKHPNIVPLVGICIK--PLALVLELAPLGGLDALL-----RHYRRSG 1919
            |:         |:..|..|:|||:|.|:|....  .:.||....|.|.|:..:     |.:|   
plant   916 HA---------EIKTLGRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRDWR--- 968

  Fly  1920 AHMGPHTFQTLVLQAARAIEYLHRR---RIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADY 1981
                  ....:.|..|||:.|||.:   |:::||:|..|:|:         |...|..   ::|:
plant   969 ------VLHKIALDIARALAYLHDQCVPRVLHRDVKPSNILL---------DDDCNAY---LSDF 1015

  Fly  1982 GISRQTAPS---GAKGFGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLRQPFE---- 2039
            |::|....|   ...|..||.|::|||   |......::|.|.:|:|:.:.|.:|.::..:    
plant  1016 GLARLLGTSETHATTGVAGTFGYVAPE---YAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFV 1077

  Fly  2040 ----GHESIK-ECILEGSRPALTQ-RETQFPTC-------------CLDLMVLCWHEQPRRRPTA 2085
                |...:: .|:|      |.| |..:|.|.             .|.|.|:|..:....|||.
plant  1078 SYGNGFNIVQWACML------LRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSLSTRPTM 1136

  Fly  2086 SQIV---SILSAPEC 2097
            .|:|   ..|..|.|
plant  1137 KQVVRRLKQLQPPSC 1151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566 8/27 (30%)
leucine-rich repeat 547..569 CDD:275380 4/16 (25%)
LRR_8 569..629 CDD:290566 17/60 (28%)
leucine-rich repeat 570..595 CDD:275380 7/24 (29%)
leucine-rich repeat 596..618 CDD:275380 8/22 (36%)
leucine-rich repeat 619..641 CDD:275380 4/22 (18%)
leucine-rich repeat 642..676 CDD:275380 10/33 (30%)
leucine-rich repeat 677..730 CDD:275380 12/54 (22%)
LRR_8 729..788 CDD:290566 12/58 (21%)
leucine-rich repeat 731..754 CDD:275380 5/22 (23%)
LRR_8 855..933 CDD:290566 18/102 (18%)
leucine-rich repeat 855..901 CDD:275380 6/69 (9%)
leucine-rich repeat 902..924 CDD:275380 8/22 (36%)
leucine-rich repeat 925..949 CDD:275380 4/23 (17%)
P-loop_NTPase 993..1211 CDD:304359 38/227 (17%)
COR 1230..1471 CDD:292713 33/243 (14%)
STYKc 1796..2092 CDD:214568 78/340 (23%)
STKc_LRRK 1801..2095 CDD:270902 78/333 (23%)
RPK2NP_186862.3 PLN00113 17..1144 CDD:215061 299/1631 (18%)
LRRNT_2 43..83 CDD:285463
leucine-rich repeat 146..169 CDD:275380 7/24 (29%)
leucine-rich repeat 170..193 CDD:275380 8/22 (36%)
leucine-rich repeat 194..217 CDD:275380 4/22 (18%)
leucine-rich repeat 218..263 CDD:275380 12/51 (24%)
leucine-rich repeat 264..287 CDD:275380 8/31 (26%)
leucine-rich repeat 288..311 CDD:275380 8/40 (20%)
leucine-rich repeat 312..335 CDD:275380 11/52 (21%)
leucine-rich repeat 336..389 CDD:275380 9/68 (13%)
leucine-rich repeat 390..437 CDD:275380 12/46 (26%)
leucine-rich repeat 585..611 CDD:275380 7/48 (15%)
leucine-rich repeat 612..635 CDD:275380 8/49 (16%)
leucine-rich repeat 636..660 CDD:275380 6/23 (26%)
leucine-rich repeat 661..684 CDD:275380 3/27 (11%)
leucine-rich repeat 685..703 CDD:275380 4/42 (10%)
leucine-rich repeat 709..728 CDD:275380 14/139 (10%)
STKc_IRAK 880..1146 CDD:270968 76/329 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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