DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and AT2G15300

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_179132.1 Gene:AT2G15300 / 816019 AraportID:AT2G15300 Length:744 Species:Arabidopsis thaliana


Alignment Length:724 Identity:137/724 - (18%)
Similarity:238/724 - (32%) Gaps:272/724 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   474 LPTPVE-VNVFLPSTSNISYSAMFPNNPTII------------DWHSMGSSVQLSVVRVPWM--V 523
            |||.:: :|....:..:..||.:  |:|.::            .|..: :..:|.:...|.|  |
plant    17 LPTLIQALNTDGVALLSFKYSIL--NDPLLVLRNWNYDDETPCSWTGV-TCTELGIPNTPDMFRV 78

  Fly   524 SGVLLLNPKLQSHPRLNEVALTAITRIDFSHNVLTSIPQELFHLVSLRYLNVAQNKITDLPAPIG 588
            :.::|.|.:|                       |.|:..:||.::.||.|:::.|          
plant    79 TSLVLPNKQL-----------------------LGSVSPDLFSILHLRILDLSDN---------- 110

  Fly   589 QTYGCPVLDELFLQDNQLTTLPAAIFHLPALSILDVSNNKLQ-QLPFDLWRAPKLRELNVAFNLL 652
                       |...    :||.::.:...|.||.:.|||:. :||..:.....|:.||::.|.|
plant   111 -----------FFHG----SLPDSVSNASELRILSLGNNKVSGELPRSISNVASLQLLNLSANAL 160

  Fly   653 RDLPVPPMQTSSSLLSLDKLNLQSFEEPPSNKPRNVTQQRLTHRNLWSA----------TLDITD 707
            .. .:||.      |||               |:|:|...|. :|.:|.          .|||:.
plant   161 TG-KIPPN------LSL---------------PKNLTVISLA-KNSFSGDIPSGFEAVQVLDISS 202

  Fly   708 NDMKWQHEQDLGDGK-TAGVGSSQLSSLNIANNLFT---SIPAA--LPCLAVNLTRLNMSYNSLR 766
            |         |.||. ......:.|..||::||..:   |.|.|  .|..|:    :::|:|:| 
plant   203 N---------LLDGSLPPDFRGTSLLYLNLSNNQISGMISPPFAEKFPASAI----IDLSFNNL- 253

  Fly   767 SMGHVTSYPATLKQL--DLSHNEISCWPSL-------------PRITE-SDPHLLCYSCVQLP-- 813
             .|.:.:.|..|.|.  ..|.|...|...|             |.|:| :.|.:........|  
plant   254 -TGPIPNTPPLLNQKTESFSGNIGLCGQPLKTLCSIPSTLSDPPNISETTSPAIAVMPTTPTPTN 317

  Fly   814 EGRDDDYKTASSKGSSSSATSFRASVLKSVCRHRRHLRLEALRTLILADNLLTRIQLSTDDATTL 878
            ...:...:||.||...|:......:.:..:.              |:|..:|...||        
plant   318 SSTESTNQTAKSKLKPSTIIGITLADIAGLA--------------IIAMFILYIYQL-------- 360

  Fly   879 FNESEDADWSVVGVNRSKVIFPNLSMLDMTNNCLKE-----IPASLHELSSLSVLNISGNVNITE 938
                           :.:..:...|..::...||::     :..|.|        |::..:..|:
plant   361 ---------------KKRRSYQEYSTFNVLQKCLEKNDTLSVKKSKH--------NVADALEFTK 402

  Fly   939 LPP-HLGL---LSRLWNLNT-----RGCLLQEPLRSMIES----KKHKT------------MDIV 978
            .|| .:|.   :||.:...|     .....|:|:.:...:    .||.|            :::.
plant   403 SPPAKMGCGSWISRRYEETTSVSSESDIENQKPVEAFDRTGGGRVKHNTETQLVTVDGETQLELD 467

  Fly   979 GYLKS-------------IYE----------------DAQPYARMKLMVVGVAGIGKSTLLDLLR 1014
            ..||:             :|:                ::.|.|:.|.....|.||.|....:|:|
plant   468 TLLKASAYVLGTNRSDGIVYKAVLENGAAFAVRRIGAESCPAAKFKEFEKEVQGIAKLRHPNLVR 532

  Fly  1015 -------------------------QGAGSGSSSSSHRSRASENHWAKRMGHARSTS----RSHR 1050
                                     ....:.|||.||:..:.|.......|.||..:    :.|.
plant   533 VRGFVWGKEEKLLISDYVPNGNLPLSSISAKSSSFSHKPLSFEARLKLARGIARGIAYIHDKKHV 597

  Fly  1051 HSSASSANI 1059
            |.:..:.||
plant   598 HGNIKANNI 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125 2/2 (100%)
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566 8/35 (23%)
leucine-rich repeat 547..569 CDD:275380 4/21 (19%)
LRR_8 569..629 CDD:290566 12/59 (20%)
leucine-rich repeat 570..595 CDD:275380 4/24 (17%)
leucine-rich repeat 596..618 CDD:275380 3/21 (14%)
leucine-rich repeat 619..641 CDD:275380 8/22 (36%)
leucine-rich repeat 642..676 CDD:275380 10/33 (30%)
leucine-rich repeat 677..730 CDD:275380 13/63 (21%)
LRR_8 729..788 CDD:290566 19/65 (29%)
leucine-rich repeat 731..754 CDD:275380 10/27 (37%)
LRR_8 855..933 CDD:290566 11/82 (13%)
leucine-rich repeat 855..901 CDD:275380 5/45 (11%)
leucine-rich repeat 902..924 CDD:275380 5/26 (19%)
leucine-rich repeat 925..949 CDD:275380 6/27 (22%)
P-loop_NTPase 993..1211 CDD:304359 20/96 (21%)
COR 1230..1471 CDD:292713
STYKc 1796..2092 CDD:214568
STKc_LRRK 1801..2095 CDD:270902
AT2G15300NP_179132.1 LRRNT_2 24..65 CDD:285463 6/43 (14%)
LRR_RI <94..254 CDD:238064 53/222 (24%)
LRR_8 101..160 CDD:290566 19/83 (23%)
leucine-rich repeat 102..125 CDD:275380 7/47 (15%)
leucine-rich repeat 126..149 CDD:275380 8/22 (36%)
leucine-rich repeat 150..173 CDD:275380 11/44 (25%)
LRR_8 172..228 CDD:290566 17/65 (26%)
leucine-rich repeat 174..194 CDD:275380 4/20 (20%)
leucine-rich repeat 195..217 CDD:275380 7/30 (23%)
leucine-rich repeat 218..242 CDD:275380 8/23 (35%)
STKc_IRAK 484..742 CDD:270968 23/123 (19%)
Pkinase 484..737 CDD:278497 23/123 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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