Sequence 1: | NP_001262772.1 | Gene: | Lrrk / 42447 | FlyBaseID: | FBgn0038816 | Length: | 2513 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001178718.1 | Gene: | Lrrk2 / 300160 | RGDID: | 1561168 | Length: | 2526 | Species: | Rattus norvegicus |
Alignment Length: | 2560 | Identity: | 567/2560 - (22%) |
---|---|---|---|
Similarity: | 917/2560 - (35%) | Gaps: | 919/2560 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 189 GHLGIARLMLDHFPELIQQPTVERWLPLHAACINGHIKLLELLISYSYPDYLYQTYRDEEGQWEW 253
Fly 254 RLPFDANAHDVTGQTSLYIASILGNKQLVGVLLKWQLHCRRTLGDSASSVSTPITPTRKRI---- 314
Fly 315 ---SFGIQAIMSKLHI----------------------SGESEGPDDLASQESTECQRCPINVNL 354
Fly 355 LCGAARETALLAAVRGGHLD---------VVQSLLQHGANPNIVAKPVEDHNDPKCCEEIYGLSN 410
Fly 411 VPIAEAC-KQRSLAMLDLLLKHGARD-DNGTAIGMAITCGDEAILSRLLAR-------------- 459
Fly 460 ------------RVHPDSDYKINK----------------------KGLPTPVEVN--------- 481
Fly 482 ---VFLPSTSNISYSAMFPNNPTIIDWHSMGS---------SVQLSVVRV--------------- 519
Fly 520 -------------------PWMVSGVLLLNPKLQSHPRLNEVALTA------ITRIDFSHNVLTS 559
Fly 560 IP---QEL---FHLVSLRYLNVAQNKITDLPAPIGQTYGCPVLDELFLQDNQLTTLPAAIFHLPA 618
Fly 619 LSILDVSNNKL-QQLPFD-LWRAPKLRELNVAFNLLRDLPVPPMQTSSSLLSLDKLNLQSFEEPP 681
Fly 682 SNKPRNVTQ--QRLTHRNLWSATLDITDNDMKWQHEQDLGDG-KTAGVGS----SQLSSLNIANN 739
Fly 740 LFTSIP--------------------AALPCLAVNLTRLNMSYNSLRSMGHVTSYPATLKQLDLS 784
Fly 785 HNEISCWPSLPRITESDPHLLCYSCVQLPEGRDDDYKTASSKGSSSSATSFRASVLKSVCRHRRH 849
Fly 850 LRLEALRTLILADNLLTRIQLSTDDATTLFNESEDADWSVVGVNRSKVIFPNLSMLDMTNNCLKE 914
Fly 915 IPASLHELSSLSVLNISGNVNITELPPHLGLLSRLWNLNTRGCLLQEPLRSMIESKKH---KTMD 976
Fly 977 IVGYLKSIYEDAQPYARMKLMVVGVAGIGKSTLL---------DLLRQGAGSGSSSSSHRSRASE 1032
Fly 1033 NHWAKRMGHARSTSRSHRHSSASSANISTVGVDIGTW---ICEKRKRAPGSHGPVVFRTWDFGGQ 1094
Fly 1095 KEYYATHQYFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISP 1159
Fly 1160 QKAEQ------LQQLIREK-FIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRS 1217
Fly 1218 PGSKEPMLLQKIPASYIALEDIVNVIACNLRAAGRD-PVLDGEQYKRLVTE-QMRLHNYKSFRDA 1280
Fly 1281 AELQQATTWCHENGVLLHYDDATLR--DYYFLDPQWLCDMLAHVVTVREINPFA-PTGVMKLDDL 1342
Fly 1343 Q-MLFRSVQVQGNGNRSYIVSLLNKFEVALTWDSRTLLIPSLLPSQEAATPNSGSTVKLSQRSRG 1406
Fly 1407 RSLGCSVSQEVNLNNLIYEQRSAPSSSSSSASVSQGLRRILLMTYFPSGFWSRLITRILADEQII 1471
Fly 1472 EAIRGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEV-PFQKTERTQPFRTD 1535
Fly 1536 GNRFKLKQDGI---WSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIR-PHMSQVAKLLA 1596
Fly 1597 LTVDHIDLLLEDWYPSLGTRFVHTSEGRFLITRLVLCPRCLWKLQLQQNNEPSDREVPPVGCNRP 1661
Fly 1662 SRSSRRGAGAYFLHGVGDPGEDGALNVFSAYLNATARRERRSEDSLGAGSDADSGVGPDSAGSSR 1726
Fly 1727 NTSVDGHPGYHLPDNSNVCYAWMIEECILSVYNQSKISCPVHLEQSMAQLAPDVIFADIPDKHTI 1791
Fly 1792 PSECI----IKGSLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAV 1852
Fly 1853 GKWDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVGICIKPLALVLELAPLGGLDALLRHYRR 1917
Fly 1918 SGAHMGPHTFQTLVLQAARAIEYLHRRRIIYRDLKSENVLVWELPQPHTEDSPRNLVHIKIADYG 1982
Fly 1983 ISRQTAPSGAKGFGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYE--------NISLRQPFE 2039
Fly 2040 GHESIKECILEGSRPALTQRETQFPTCCLD-LMVLCWHEQPRRRPTASQIVSILSAPECIHLLDV 2103
Fly 2104 VAMPHSEKIVCGVFQSL--------VGMGDDERCGLELWLPSFGSRIDILDCSPSGSLLQCNSIS 2160
Fly 2161 CSPQPQVAPPKTPENGANSRARSAQRLPKMNMLCCCLVGEAI----WM--GDVSGNLHAYST--S 2217
Fly 2218 TYAHLFSYMLDPNIKSAVISLVYMEKIARVAVGTHNGRVFLVDATQMPSNCAFAEGSFVLTE--- 2279
Fly 2280 -ICSGF----VLHAACSVVVDGIYELWCGEIAGKINVFPLNENGVSGHQAL----CHSEEPNLIE 2335
Fly 2336 DVKVARMCSNESH-----------------VFSCLY------PGCMVYQWDVISKRIENKLDCSK 2377
Fly 2378 LLPCSESLQSIAID-EHVNLIKCQISALAAH-NSELYIGTTWGCLIVAELHTLRPISVFRPYENE 2440
Fly 2441 IKSIITLSKDNVP-LIATIGRRYRS 2464 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrrk | NP_001262772.1 | Ank_2 | 111..200 | CDD:289560 | 4/10 (40%) |
ANK | 146..286 | CDD:238125 | 20/96 (21%) | ||
ANK repeat | 146..177 | CDD:293786 | |||
Ank_4 | 179..232 | CDD:290365 | 10/42 (24%) | ||
ANK repeat | 179..209 | CDD:293786 | 4/19 (21%) | ||
Ank_2 | 216..389 | CDD:289560 | 39/210 (19%) | ||
ANK | 361..477 | CDD:238125 | 31/174 (18%) | ||
ANK repeat | 361..390 | CDD:293786 | 8/37 (22%) | ||
Ank_2 | 364..464 | CDD:289560 | 26/136 (19%) | ||
ANK repeat | 406..435 | CDD:293786 | 9/29 (31%) | ||
ANK repeat | 437..464 | CDD:293786 | 8/52 (15%) | ||
LRR_8 | <544..580 | CDD:290566 | 14/47 (30%) | ||
leucine-rich repeat | 547..569 | CDD:275380 | 10/27 (37%) | ||
LRR_8 | 569..629 | CDD:290566 | 19/59 (32%) | ||
leucine-rich repeat | 570..595 | CDD:275380 | 8/24 (33%) | ||
leucine-rich repeat | 596..618 | CDD:275380 | 6/21 (29%) | ||
leucine-rich repeat | 619..641 | CDD:275380 | 5/23 (22%) | ||
leucine-rich repeat | 642..676 | CDD:275380 | 4/33 (12%) | ||
leucine-rich repeat | 677..730 | CDD:275380 | 12/59 (20%) | ||
LRR_8 | 729..788 | CDD:290566 | 21/78 (27%) | ||
leucine-rich repeat | 731..754 | CDD:275380 | 10/42 (24%) | ||
LRR_8 | 855..933 | CDD:290566 | 21/77 (27%) | ||
leucine-rich repeat | 855..901 | CDD:275380 | 10/45 (22%) | ||
leucine-rich repeat | 902..924 | CDD:275380 | 8/21 (38%) | ||
leucine-rich repeat | 925..949 | CDD:275380 | 8/23 (35%) | ||
P-loop_NTPase | 993..1211 | CDD:304359 | 69/236 (29%) | ||
COR | 1230..1471 | CDD:292713 | 69/246 (28%) | ||
STYKc | 1796..2092 | CDD:214568 | 94/308 (31%) | ||
STKc_LRRK | 1801..2095 | CDD:270902 | 96/302 (32%) | ||
Lrrk2 | NP_001178718.1 | leucine-rich repeat | 984..1011 | CDD:275380 | 9/26 (35%) |
leucine-rich repeat | 1012..1035 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 1036..1058 | CDD:275380 | 6/21 (29%) | ||
leucine-rich repeat | 1059..1083 | CDD:275380 | 5/23 (22%) | ||
leucine-rich repeat | 1084..1107 | CDD:275380 | 8/51 (16%) | ||
leucine-rich repeat | 1108..1129 | CDD:275380 | 8/41 (20%) | ||
leucine-rich repeat | 1130..1173 | CDD:275380 | 10/42 (24%) | ||
leucine-rich repeat | 1174..1196 | CDD:275380 | 5/21 (24%) | ||
leucine-rich repeat | 1197..1220 | CDD:275380 | 9/75 (12%) | ||
leucine-rich repeat | 1221..1245 | CDD:275380 | 10/45 (22%) | ||
Gem1 | 1332..1550 | CDD:224025 | 80/286 (28%) | ||
RocCOR | 1333..1506 | CDD:206741 | 66/226 (29%) | ||
COR | 1526..1739 | CDD:292713 | 78/321 (24%) | ||
S_TKc | 1883..2145 | CDD:214567 | 99/313 (32%) | ||
STKc_LRRK2 | 1883..2134 | CDD:270970 | 96/302 (32%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 85 | 1.000 | Domainoid score | I8014 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0192 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D10820at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm46327 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105040 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
7 | 6.680 |