DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and HMGB6

DIOPT Version :9

Sequence 1:NP_732527.1 Gene:TFAM / 42433 FlyBaseID:FBgn0038805 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_568431.1 Gene:HMGB6 / 832408 AraportID:AT5G23420 Length:241 Species:Arabidopsis thaliana


Alignment Length:157 Identity:34/157 - (21%)
Similarity:66/157 - (42%) Gaps:46/157 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 VRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDATLTEEQRAEIK----QLKQDLVDAKE 169
            |..:|.:....||:::..|:|:                   ..|.:||.|    :.|:...|..:
plant    50 VALISMHNCSLDAKIRVNLEAQ-------------------VVETQAEAKKKPAEKKKTTSDGPK 95

  Fly   170 RRQLRKRVKE------LGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTA---------K 219
            .::|:|...|      ..:||:|.:||..|::..|        :|::..|..:.|         |
plant    96 PKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFR--------KTFKSEHNGSLAKDAAKIGGEK 152

  Fly   220 WTRLSDSEKEVYMQESRKEMELYRKAI 246
            |..|::.||:||:.::.:....|.|::
plant   153 WKSLTEEEKKVYLDKAAELKAEYNKSL 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_732527.1 HMGB-UBF_HMG-box 78..142 CDD:238686 6/32 (19%)
HMGB-UBF_HMG-box 183..247 CDD:238686 19/73 (26%)
HMGB6NP_568431.1 HMGB-UBF_HMG-box 115..179 CDD:238686 19/71 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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