DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and AT5G23405

DIOPT Version :9

Sequence 1:NP_732527.1 Gene:TFAM / 42433 FlyBaseID:FBgn0038805 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_851063.1 Gene:AT5G23405 / 832406 AraportID:AT5G23405 Length:149 Species:Arabidopsis thaliana


Alignment Length:19 Identity:5/19 - (26%)
Similarity:12/19 - (63%) Gaps:0/19 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 WTRLSDSEKEVYMQESRKE 238
            |..:::.||:.|:.::..|
plant   101 WKSMTEDEKKDYLDKAADE 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_732527.1 HMGB-UBF_HMG-box 78..142 CDD:238686
HMGB-UBF_HMG-box 183..247 CDD:238686 5/19 (26%)
AT5G23405NP_851063.1 HMGB-UBF_HMG-box 67..117 CDD:238686 4/15 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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