Protein Alignment TFAM and hmgb1b

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_001092721.2
• Gene: hmgb1b / 795095
• ZFINID: ZDB-GENE-030131-8480
• Length: 197
• Species: Danio rerio
• Alignment Length: 189
• Identity: 43/189 - (22%)
• Similarity: 74/189 - (39%)
• Gaps: 36/189 - (19%)

  Fly    75 PPRPKKPLTPYFRFMREQRPKLKAANPQ--ITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQI 137
            |.:|:..::.|..|::..|.:.|..:|:  :...|..::.|:.|....|:.|.:.:...|:|:..
Zfish     5 PRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVR 69

  Fly   138 YVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRF-------IA 195
            |..|...|                     ...:.:.:||.|:...||:|.|||..|       |.
Zfish    70 YEREMKNY---------------------IPPKGEKKKRFKDPNAPKRPPSAFFIFCGDYRPKIK 113

  Fly   196 SERINTPQGDKQTYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEKMI 254
            .|......||..      :|....|...|...|:.|.:::.|..|.|.|.|:::..|.|
Zfish   114 GENPGLSIGDIA------KKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGI 166

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	14/65 (22%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	20/70 (29%)
hmgb1b	NP_001092721.2	HMG_box_2	6..77	CDD:286146	15/70 (21%)
		HMG_box	94..161	CDD:278906	21/72 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.920