Protein Alignment TFAM and hmgb3a

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_001116308.1
• Gene: hmgb3a / 561025
• ZFINID: ZDB-GENE-050428-1
• Length: 213
• Species: Danio rerio
• Alignment Length: 226
• Identity: 48/226 - (21%)
• Similarity: 93/226 - (41%)
• Gaps: 50/226 - (22%)

  Fly    73 GLPPRPKKPLTPYFRFMREQRPKLKAANPQI--TTVEVVRQLSKNWSDADAQLKERLQAEFKRDQ 135
            |.|.:||..::.|..|::..|.:.|..:|:|  :..|..::.|..|.....:.|.|.:...|:|:
Zfish     4 GDPRKPKGKMSAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMTDKEKSRFEDMAKQDK 68

  Fly   136 QIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRFIASERIN 200
            ..|.:|...|                   :..|     |.:.|:...||:|.|.|..|.:..|
Zfish    69 VRYDQEMMHY-------------------MPGK-----RGKKKDPNAPKRPPSGFFLFCSEHR-- 107

  Fly   201 TPQ----------GDKQTYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEKMIR 255
             ||          ||..      :|....|..|:|:.|:.::.::.|..:.|:|.::.::.|. :
Zfish   108 -PQIKAQYPSLGIGDVA------KKLGEMWNGLTDANKQPFLMKANKLKDKYQKDVADYKTKS-K 164

  Fly   256 LGHIDV---VRHGNLIDPPEPKPRKTLASKD 283
            .|.:.:   :...|.: ||:|..:..:..::
Zfish   165 AGGVSMGMGMPMANCM-PPKPMMKSNMDDEE 194

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	16/65 (25%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	19/73 (26%)
hmgb3a	NP_001116308.1	HMG_box_2	7..78	CDD:286146	17/70 (24%)
		HMG_box	92..159	CDD:278906	19/75 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.920