Protein Alignment TFAM and hmgb3b

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_001017769.1
• Gene: hmgb3b / 550466
• ZFINID: ZDB-GENE-050417-290
• Length: 198
• Species: Danio rerio
• Alignment Length: 183
• Identity: 43/183 - (23%)
• Similarity: 81/183 - (44%)
• Gaps: 25/183 - (13%)

  Fly    73 GLPPRPKKPLTPYFRFMREQRPKLKAANPQITT--VEVVRQLSKNWSDADAQLKERLQAEFKRDQ 135
            |.|.:||..::.|..|::..|.:....||.:|.  .|..::.|:.|.....:.|.:.:...|:|
Zfish     4 GDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQD- 67

  Fly   136 QIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRFIASER-I 199
                  :.:||               |:::.....::.||:.|:...|::|.|.|..|.|.:| |
Zfish    68 ------KARYD---------------QEMMHYNPGKKGRKQKKDPNAPRRPPSGFFLFCAEQRPI 111

  Fly   200 NTPQGDKQTYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEK 252
            ...|.......:..:|....|..||||||:.::..:.|..:.|:|.::.:.:|
Zfish   112 IKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYRKK 164

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	14/65 (22%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	20/64 (31%)
hmgb3b	NP_001017769.1	HMG_box_2	7..78	CDD:286146	17/92 (18%)
		HMG_box	94..161	CDD:278906	20/66 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.920