Protein Alignment TFAM and Hmgb2l1

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_001316810.1
• Gene: Hmgb2l1 / 498072
• RGDID: 1564519
• Length: 210
• Species: Rattus norvegicus
• Alignment Length: 219
• Identity: 54/219 - (24%)
• Similarity: 84/219 - (38%)
• Gaps: 54/219 - (24%)

  Fly    73 GLPPRPKKPLTPYFRFMREQRPKLKAANP--QITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQ 135
            |.|.:|:..::.|..|::..|.:.|..:|  .:...|..::.|:.|....|:.|.:.:...|.|:
  Rat     4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDK 68

  Fly   136 QIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRF------- 193
            ..|..|...|                   |..|..::.:|  |:...||:|.|||..|
  Rat    69 ARYDREMKNY-------------------VPPKGDKKGKK--KDPNAPKRPPSAFFLFCSEHRPK 112

  Fly   194 IASERINTPQGDKQTYREWHQKTTAK-----WTRLSDSEKEVYMQESRKEMELYRKAISVWEEKM 253
            |.||......||           |||     |:..|..:|:.|.|::.|..|.|.|.|:.:..|
  Rat   113 IKSEHPGLSIGD-----------TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK- 165

  Fly   254 IRLGHIDVVRHGNLIDPPEPKPRK 277
               |..:|.:.|    |..|...|
  Rat   166 ---GKSEVGKKG----PGRPTGSK 182

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	14/65 (22%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	24/75 (32%)
Hmgb2l1	NP_001316810.1	HMG_box_2	6..78	CDD:401091	16/71 (23%)
		HMG_box	95..162	CDD:395407	25/77 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020