DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and tHMG2

DIOPT Version :10

Sequence 1:NP_732527.1 Gene:TFAM / 42433 FlyBaseID:FBgn0038805 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster


Alignment Length:77 Identity:21/77 - (27%)
Similarity:36/77 - (46%) Gaps:16/77 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 RPKKPASAFLRFIASERINTPQGDKQTYREWH-----QKTTAK----WTRLSDSEKEVYMQESRK 237
            |||||.|||:.::.|.       .::..|..|     |:.:.|    |..::|..|.|:.:.:.|
  Fly     8 RPKKPMSAFMLWMNST-------GRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASK 65

  Fly   238 EMELYRKAISVW 249
            .|..|::.:..|
  Fly    66 AMAEYKEKLEKW 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_732527.1 HMG-box_SF 78..138 CDD:469606
HMG-box_SF 168..263 CDD:469606 21/77 (27%)
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 18/74 (24%)
Blue background indicates that the domain is not in the aligned region.

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