Protein Alignment TFAM and tHMG1

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_651055.1
• Gene: tHMG1 / 42650
• FlyBaseID: FBgn0038978
• Length: 126
• Species: Drosophila melanogaster
• Alignment Length: 71
• Identity: 20/71 - (28%)
• Similarity: 35/71 - (49%)
• Gaps: 4/71 - (5%)

  Fly   182 RPKKPASAFLRFIAS---ERINTPQGDKQTYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYR 243
            |||||.|||:.::.|   :.|.....| .:.:|...|....|..::|.:|.|:.:.:...|..|:
  Fly     7 RPKKPMSAFMLWMNSTGRKHIKAEHPD-FSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYK 70

  Fly   244 KAISVW 249
            :.:..|
  Fly    71 EKLKQW 76

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686
		HMGB-UBF_HMG-box	183..247	CDD:238686	18/66 (27%)
tHMG1	NP_651055.1	HMGB-UBF_HMG-box	8..74	CDD:238686	18/66 (27%)
		Herpes_U55	<55..>116	CDD:253772	5/22 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.910