DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and Hmg-2

DIOPT Version :9

Sequence 1:NP_732527.1 Gene:TFAM / 42433 FlyBaseID:FBgn0038805 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster


Alignment Length:192 Identity:46/192 - (23%)
Similarity:77/192 - (40%) Gaps:39/192 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 KDWPPSDPSRANDTDHRPLTPPRPLAAASISNTPAVPSKTLEEQLGLPPRPKKPLTPYFRFMREQ 92
            :|.|.....:|.:          |....|.|:..:...|..:.::.:...||.||..|.|||.::
  Fly    36 EDKPAKGKKKAKN----------PKGRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDR 90

  Fly    93 RPKLKAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDATLTEEQRAEI 157
            |.:|:...||.|.:|..|.:.:.|.    ||.|..:..       |:|...|..|...|:.:..:
  Fly    91 REELRREQPQRTALEHTRIIGEEWH----QLPEERKLP-------YIEAAAKDKAIYQEQLQMFL 144

  Fly   158 KQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTAK 219
            |:..:  :.|.|..:.:|..|..|.||:              .||:|:....:.  :||.||
  Fly   145 KEHPE--IVANELAKAKKATKLDGSPKE--------------KTPKGESALGKA--KKTKAK 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_732527.1 HMGB-UBF_HMG-box 78..142 CDD:238686 21/63 (33%)
HMGB-UBF_HMG-box 183..247 CDD:238686 9/37 (24%)
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 24/75 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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