Protein Alignment TFAM and Hmg20b

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: XP_006241006.1
• Gene: Hmg20b / 362825
• RGDID: 1309235
• Length: 344
• Species: Rattus norvegicus
• Alignment Length: 253
• Identity: 55/253 - (21%)
• Similarity: 98/253 - (38%)
• Gaps: 61/253 - (24%)

  Fly    32 PSDPSRANDTDHRPLTPPRPLAAASISNTPAVPSKTLEEQLGLPPRPKKPLTPYFRFMREQRPKL 96
            |:..|::....|.||..|     ......|    |..:.:..||..||.|:|.|.||:.|:|.::
  Rat    59 PAHSSQSPSQGHSPLLQP-----VKKRGWP----KGKKRKKILPNGPKAPVTGYVRFLNERREQI 114

  Fly    97 KAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDAT----LTEEQRAEI 157
            :..:|.:...|:.:.|...||......|:|...|.::::|.|::|...|..:    :..|:..|.
  Rat   115 RTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQEN 179

  Fly   158 KQLKQDL--------------VDAKE--------------RRQLRKRVKELGRPKKPASAFLRFI 194
            |..|:|.              ||..:              ..|.:.|..||.|.:|...||
  Rat   180 KIKKEDSSSGLMNTLLNGHKGVDCGDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAF---- 240

  Fly   195 ASERINTPQGDKQTYREWHQKTTAKWTRLSDSEKEVYMQESR-----KEMELYRKAIS 247
                    :......:...|...:...||   |:|:.::|.|     ::::..|:|::
  Rat   241 --------EEQNAVLQRHTQSMNSARERL---EQELALEERRTLALQQQLQAVRQALT 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	19/63 (30%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	12/68 (18%)
Hmg20b	XP_006241006.1	NHP6B	26..229	CDD:227935	40/178 (22%)
		HMGB-UBF_HMG-box	96..160	CDD:238686	19/63 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810