Protein Alignment TFAM and Hmg20a

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: XP_006243179.1
• Gene: Hmg20a / 315689
• RGDID: 1564760
• Length: 350
• Species: Rattus norvegicus
• Alignment Length: 191
• Identity: 54/191 - (28%)
• Similarity: 81/191 - (42%)
• Gaps: 25/191 - (13%)

  Fly    78 PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEER 142
            ||.|||.|.|||.|:|.:|:|..|::...|:.|.|...||....:.|:|...|..||::.|::|.
  Rat   106 PKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKEL 170

  Fly   143 TKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPK----KPASAF-LRFIASERINTP 202
            .:|..|   |......:..||....|..||...|.......|    |..|.| :.....|.:|..
  Rat   171 EQYQKT---EAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHS 232

  Fly   203 QGDKQTYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVR 263
            :..:...|:         .|.|:.|.|......:|.:|..|.|:    ||:    .:||::
  Rat   233 KAREAELRQ---------LRKSNMEFEERNAALQKHVESMRTAV----EKL----EVDVIQ 276

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	25/63 (40%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	15/68 (22%)
Hmg20a	XP_006243179.1	HMGB-UBF_HMG-box	106..171	CDD:238686	26/64 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900