Protein Alignment TFAM and Hmgb3

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: XP_003751730.1
• Gene: Hmgb3 / 305373
• RGDID: 1564407
• Length: 241
• Species: Rattus norvegicus
• Alignment Length: 231
• Identity: 58/231 - (25%)
• Similarity: 92/231 - (39%)
• Gaps: 46/231 - (19%)

  Fly    36 SRANDTDH-----RPLTPPRPLAAASISNTPAVPSKTLEEQLGLPPRPKKPLTPYFRFMREQRPK 95
            |.|:.|.|     |.|..|.|.   |:.........::....|.|.:||..::.|..|::..|.:
  Rat     6 SGAHTTFHPRLHSRVLATPSPF---SLLGGREGRRHSVRMAKGDPKKPKGKMSAYAFFVQTCREE 67

  Fly    96 LKAANPQITT--VEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDATLTEEQRAEIK 158
            .|..||::..  .|..::.|:.|....::.|.:.....|.|       :.:||           :
  Rat    68 HKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKAD-------KVRYD-----------R 114

  Fly   159 QLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRF-------IASERINTPQGDKQTYREWHQKT 216
            ::| |...||.    .|:.|:...||:|.|.|..|       |.|.......||..      :|.
  Rat   115 EMK-DYGPAKG----GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVA------KKL 168

  Fly   217 TAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEK 252
            ...|..||||||:.||.::.|..|.|.|.::.::.|
  Rat   169 GEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADYKSK 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	14/65 (22%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	24/70 (34%)
Hmgb3	XP_003751730.1	HMG_box_2	54..119	CDD:286146	15/83 (18%)
		HMG_box	134..201	CDD:278906	24/72 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020