Protein Alignment TFAM and hmg-1.2

DIOPT Version :9

• Sequence 1: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Sequence 2: NP_001380090.1
• Gene: hmg-1.2 / 175890
• WormBaseID: WBGene00001972
• Length: 235
• Species: Caenorhabditis elegans
• Alignment Length: 226
• Identity: 47/226 - (20%)
• Similarity: 92/226 - (40%)
• Gaps: 49/226 - (21%)

  Fly    61 PAVPSKTLEEQLGLPPRP-------------KKPL----TPYFRFMR----EQRPKLKAANPQIT 104
            |:..|.||.:...|.|.|             |.|:    :||..|::    |.:.|....|.|:|
 Worm    11 PSSSSPTLYQSHQLQPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVT 75

  Fly   105 TVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKE 169
              |:.::.|:.|       |..:..|.:|..::..::..:|        :||:........||..
 Worm    76 --EISKKCSEKW-------KTMVDDEKRRFYELAQKDAERY--------QAEVSVAAYGGEDAMR 123

  Fly   170 RRQLRKRVKELGRPKKPASAFLRFIASERINTPQGDKQTYREWH-----QKTTAKWTRLSDSEKE 229
            :|:..|  |:...||:..|||..:...:|.....|    :.:|.     |:....|..:....|:
 Worm   124 KRKRAK--KDPHAPKRALSAFFFYSQDKRPEIQAG----HPDWKVGQVAQELGKMWKLVPQETKD 182

  Fly   230 VYMQESRKEMELYRKAISVWEEKMIRLGHID 260
            :|.|:::.:.:.|...:..::.:|.::..:|
 Worm   183 MYEQKAQADKDRYADEMRNYKAEMQKMSGMD 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	17/84 (20%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	14/68 (21%)
hmg-1.2	NP_001380090.1	HMGB-UBF_HMG-box	50..112	CDD:238686	17/78 (22%)
		HMGB-UBF_HMG-box	135..200	CDD:238686	14/68 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020