DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stat92E and SHB

DIOPT Version :9

Sequence 1:NP_001262760.1 Gene:Stat92E / 42428 FlyBaseID:FBgn0016917 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001185427.1 Gene:SHB / 844190 AraportID:AT1G78540 Length:696 Species:Arabidopsis thaliana


Alignment Length:670 Identity:143/670 - (21%)
Similarity:238/670 - (35%) Gaps:226/670 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 YMVDPSDLLAVSNSCNPPV----------------------VQGIG-PIHNVQNTGIASPALGMV 184
            ||.||..:|:|:.|.:..:                      ...|| |:|..... :||......
plant   185 YMKDPPLMLSVNKSSSSGIKLDDCGVWQASCKEMFSLDVLLSNAIGQPVHKDVEV-VASLLYADT 248

  Fly   185 TPKVELYEVQHQIM--QSLNEFGNCANALKLLAQNYSYMLN-STSSPNAEAAYRSLIDEKAAIVL 246
            .|:.::.|.:..::  ....:|.:....:|||....|:.|. |..|.|::       |....|..
plant   249 LPEAKMGEAEAPLLIRDEGVQFSSDDRPIKLLNGRSSFKLKISQLSSNSD-------DRLFWIKF 306

  Fly   247 TMRRSFMYYESLHEMVIHELKNWRHQQAQAGNGAPFNEGSLDDIQRCFEMLESFIAHMLAAVKEL 311
            .:|.:..|                          ||                      |.||.. 
plant   307 GIRNAKDY--------------------------PF----------------------LQAVSN- 322

  Fly   312 MRVRLVTEEPELTHLLEQVQNAQKNLVCSAFIVDKQPPQVMKTNTRFAASVRW----LIGSQLG- 371
             .:|.::..||    ::.|....|.|.....:...:.|.::: ||.....:|.    :.||:.. 
plant   323 -PIRCISVSPE----VQPVSVTPKRLTNIDHLSSTESPDLLQ-NTSSVKRIRLGKESVSGSEESY 381

  Fly   372 --IHNNPPTVECIIMSEIQSQRFVTRN----TQMDNSSLSGQSSGEIQ---NASSTMEYQQNNHV 427
              .:::|.|          |::|...|    .:.||||:..::| |::   :.|:..:|...|.:
plant   382 QQCNSHPQT----------SRQFENGNGMRLHEEDNSSIDSENS-EMRYTISDSTIFKYCLGNLI 435

  Fly   428 FSASFRNMQLKKIKRAEKKGTESVMDEKFALFFYTTTTVNDFQIRV-----------WTLSLPVV 481
            ..|    :.||:|  ......:.|::....:..|:..:.:.:||.:           |      :
plant   436 DKA----LLLKEI--TNNSSDDEVLEFANQVSLYSGCSHHSYQINMARELIAEGTNAW------I 488

  Fly   482 VIVHGNQEPQSWATITWDNAFAEIVRDPFMITDRVTWAQLSVALNIKFGSCTGRSLTIDNLDFLY 546
            :|...||.      :.|||...|| .:.||                :...|:.||||  :.||  
plant   489 LISRNNQH------VHWDNVVYEI-EEHFM----------------RISKCSSRSLT--HQDF-- 526

  Fly   547 EKLQREERS-EYITWNQFCKEPMPDRSFTFWEWFFAI-MKLTKDHMLGMWKAGC---IMGFINKT 606
            |.|:|.... ||||...|.|         .|.|.|.: ..:::..:.|||::..   |.|||.|.
plant   527 ELLRRISGCYEYITQENFEK---------MWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKE 582

  Fly   607 KAQTDLLRSVYG--IGTFLLRFSDS------ELGGVTIAYVNENGLVTMLAPWTARDFQVLNLAD 663
            :|:    .|:.|  .|||:|||..|      :.|.:.:.||             ..||.   |..
plant   583 EAE----HSLQGQEPGTFILRFPISRTWPHPDAGSLVVTYV-------------GHDFA---LHH 627

  Fly   664 RIRDLDVLCWLHPSDR--NASPVKRDVAFGEFYSKRQEPEPLVLDPVTGYVKSTLHVHVCRNGEN 726
            :...:|.:|  ..|:|  :|.|: :|:...       |||...|    |.....|.:.||.    
plant   628 KQLKIDNIC--ESSERYMDAKPL-QDMLLA-------EPELSRL----GRNVVLLWIFVCA---- 674

  Fly   727 GSTSGTPHHAQESMQLGNIS 746
            ||...|..:|..::|..|:|
plant   675 GSKEATECYAFSNIQTLNLS 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Stat92ENP_001262760.1 STAT_int 2..119 CDD:214942
STAT_alpha 151..340 CDD:279369 35/214 (16%)
STAT_bind 342..587 CDD:280939 58/271 (21%)
SH2_STAT_family 578..696 CDD:198175 33/131 (25%)
SHBNP_001185427.1 LamG 31..168 CDD:304605
SH2_SHA 563..668 CDD:198201 36/138 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11801
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.