DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir92a and grid1a

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:701 Identity:144/701 - (20%)
Similarity:255/701 - (36%) Gaps:164/701 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VY-NNSASTTPLQLEYLSAL--ELVLRELSKPIRLQW--INVAFLKDLNDLEDQVMGALNSSVTE 90
            || |...|.|.:.....|||  ..|:|::. |:   |  .|:..:::     :..:.:|.....|
Zfish   256 VYANEEVSDTEIMELVHSALGRMTVIRQIF-PL---WRDTNIRCMRN-----NHRISSLLCDPQE 311

  Fly    91 GFITILSQTHHFIHARYYATRNANVR-LKDKRYLFLCEDESPAELLCMDILQFYPHHLMVRPGTE 154
            |::..|..:..:::.......||..| |:|:::      .|.|.|.||            |..|:
Zfish   312 GYLQSLEVSSLYLYDSVLMLANAFYRKLEDRKW------HSMASLNCM------------RKSTK 358

  Fly   155 TAPTGPTGPHPDPRRGGGASVSTKNKDDGEGGAG---NKTTSPYRDINFEL----WTQKFVGAVG 212
                        |..||.:.:.|..|....|..|   .::......:.||:    :::.|...|.
Zfish   359 ------------PWNGGWSMLDTIQKGRISGLTGLMDFRSNGANSHVQFEILGTSYSETFGKDVK 411

  Fly   213 NLDALLLDAFLPNETFANRVELYPNKLLNLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQW 277
            .|.....|..|......||.:      ..:|..:|.|.::...|:.:......||          
Zfish   412 RLATWDSDRGLNGSLRENRAD------HGMQGITLKVVTLLEEPFVMVAENILGQ---------- 460

  Fly   278 PNRSLTFDGAEANVMKTFCQVHNCHLRVEAYG-AD-NWGGIYDNESSDGMLGDIYEQRVEMAIGC 340
            |.|   :.|...:|:....::  ...:.|.|. || .:|....|.|.:||:|::..:|.::||..
Zfish   461 PKR---YKGFSIDVLDALAKI--LGFKYEMYQVADAKYGSPQTNGSWNGMIGELIGKRADVAISA 520

  Fly   341 --IYNWYDGITETSHTIARSSVTILGPAPAPLPSWRTNIM----PFNNRAWLVLISTLVICGTFL 399
              |....:.:.:.|......||.||    ......|.||.    ||:...|..:.:.:.:.|..:
Zfish   521 ITITPERENVVDFSKRYLDYSVGIL----MTKTEERLNIFSLLAPFDLAVWACIAAAIPVVGVMV 581

  Fly   400 YFMKYV-SYRLRY-SGTQVKFHHSRKLEKSMLDIFALFIQQPSAPLSF-DRFAPRFFLATILCAT 461
            :.::.| |.|.:. .|.......:...:.::..::..|:||...  || ...|.|..:.:....|
Zfish   582 FLLRRVQSVRSQNPPGPHQPASVTTSFQSAIWIVYGAFVQQGGE--SFMSSMALRIAMGSWWLFT 644

  Fly   462 ITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSS------------DL 514
            :.:.:.|:..|.:.||       |..::...::....|..|.|...||:.|            .|
Zfish   645 LIVCSSYTANLAAYLT-------VSRMDNAIRTFQDLSKQSEINYGTVRESAVFEYFRVKGTNPL 702

  Fly   515 ETEQILARNFEV------HDYSYLSNVSFMPNYGFGIERLSSG------SLSVGDYVSTEALENR 567
            |.:...|..:..      .|.|..|...       ||.::...      .::|.:|.:       
Zfish   703 EQDSTFAELWRTINKNQGQDNSVTSPAE-------GIRKVKRDPYAFLWDMAVLEYAA------- 753

  Fly   568 IVLHDDLYFDYTRAV-----SIRGWILMPE--------LNKHIRTCQETGLYFHWELEFI-DKYM 618
              |.||   |.|..|     |.:|:.|..:        .::.|...||.|     :|:.: .|:.
Zfish   754 --LTDD---DCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQEKG-----DLDILKQKWW 808

  Fly   619 DKKKQEVLMDLANGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAEL 669
            .:|.:   .||....:.:...:||.:.:.||...:||.|:..|  .|||.|
Zfish   809 PRKGR---CDLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLA--CLVAAL 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 43/206 (21%)
PBP2_iGluR_delta_1 437..809 CDD:270448 83/423 (20%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591142
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.