DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and gria4a

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:574 Identity:106/574 - (18%)
Similarity:196/574 - (34%) Gaps:181/574 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 EGGAGNKTTSPY-RDIN-----FELWTQ--KFVGAVGNLDALLLDAFLPNETFANRVELYPNKLL 240
            :|..||.....| |.:|     |||.:.  :.:|...:||.|:|   :.|       ||......
Zfish   350 QGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDLDKLVL---VQN-------ELSMGNDS 404

  Fly   241 NLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSLTFDGAEANVMKTFC-----QVHN 300
            .::.|:::|.:|...||.:             :...|.    .::|.|.  .:.:|     :|..
Zfish   405 AMENRTVIVTTIMEGPYVM-------------LKKNWE----MYEGNEQ--FEGYCVDLASEVAK 450

  Fly   301 CHLRVE---AYGADNWGGIYDNESS--DGMLGDIYEQRVEMAIGCIYNWYDGITETSHTIARSSV 360
             |:.::   :...|...|..|.|:.  :||:|::...:.|:|:..:          :.|:.|..|
Zfish   451 -HIGIKYKISIVLDGKYGARDPETKIWNGMVGELVYGKAEIAVAPL----------AITLVREEV 504

  Fly   361 TILGPAPAPLPSWRTNIM----------------PFNNRAWLVLISTLVICGTFLYFMKYVSYRL 409
            ....   .|..|...:||                |.....|:.::...:.....|:.:.      
Zfish   505 IDFS---KPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVS------ 560

  Fly   410 RYSGTQVKFHHSRKLEK------------------SMLDIFALFIQQPSAPLSFDRFAPRFFLAT 456
            |:|..:   .|:.:.|:                  |:......|:||..      .|.||.....
Zfish   561 RFSPYE---WHTEEPEEGSDGPPSDQPPNEFGIFNSLWFSLGAFMQQGC------DFTPRSLSGR 616

  Fly   457 ILCA-----TITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLET 516
            |:..     |:.:.:.|:..|.:.||.....:|:::.|..|:.       :.|...|:.|.  .|
Zfish   617 IVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ-------TEIAYGTLDSG--ST 672

  Fly   517 EQILARN-FEVHD--YSYLSNVS---FMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLY 575
            ::...|: ..|::  :||:.:..   |......|:.|:..   |.|.|.         .|.:...
Zfish   673 KEFFRRSKIAVYEKMWSYMKSAEPTVFTKTTAEGVARVRK---SKGKYA---------FLLESTM 725

  Fly   576 FDYTR--------------------AVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDK 620
            .:||.                    ..:.:|..|...:|..:....|.|:            :||
Zfish   726 NEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSQLGTPVNLAVLKLSEAGV------------LDK 778

  Fly   621 KKQEVLMDLA------NGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAE 668
            .|.:...|..      :|.|.|.: |||.:.|:||..::|..|:..|....:.|
Zfish   779 LKNKWWYDKGECGPKDSGSKDKSS-QALSLSNVAGVFYILVGGLGLAMLVALVE 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383 13/42 (31%)
ANF_receptor 34..375 CDD:279440 8/24 (33%)
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 76/462 (16%)
Lig_chan 540..821 CDD:278489 58/329 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591678
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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