DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and GluRIA

DIOPT Version :10

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:428 Identity:88/428 - (20%)
Similarity:145/428 - (33%) Gaps:114/428 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 YGADNWGGIYDNESSDGMLGDIYEQRVEMAIGC--IYNWYDGITETSHTIARSSVTILGPAPA-P 369
            |||:|.   |.....|||:|::..:..::||..  |....:.:.:.|.......::|:...|. .
  Fly   537 YGAENQ---YAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQ 598

  Fly   370 LPSWRTNIMPFNNRAWLVLISTLVICGTFLYFM-KYVSYRLR----------------------Y 411
            .|...:.:.|.:...|:.:|.:.|.....|||: ::..|..|                      .
  Fly   599 TPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATL 663

  Fly   412 SGTQVKFHHSRKLEKSMLDIF----ALFIQQPSAPLSFDRFAPRFFLATILCATITLENIYSGQL 472
            |..|.........|.:||:.|    |.|:|| ...::....|.|...|.....||.|.:.|:..|
  Fly   664 SEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQ-GCDITPPSIAGRIAAAVWWFFTIILISSYTANL 727

  Fly   473 KSMLTFPFYSAPVDTIEKWAQ------------SGWKWSAPSIIWVHTVQSSDLETEQILARNFE 525
            .:.||.....||:.|.|....            |.|::...|.|.:|......:...|    :..
  Fly   728 AAFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQ----HHS 788

  Fly   526 VHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDY-VSTEALENRIVLHDDLYFDYTRA-------- 581
            ||.|..            ||.|:..   |.|.| :..|:.:|          :|..|        
  Fly   789 VHTYDE------------GIRRVRQ---SKGKYALLVESPKN----------EYVNARPPCDTMK 828

  Fly   582 ----VSIRGW--------ILMPELNKHIRTCQETG----LYFHWELEFIDKYMDKKKQEVLMDLA 630
                :..:|:        .|...||:.:.|.:|.|    :...|       :.||.:       .
  Fly   829 VGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKW-------WFDKTE-------C 879

  Fly   631 NGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAE 668
            |..:....|..|.:.|:||..::|..|:..|....:.|
  Fly   880 NLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIME 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..456 CDD:380603
PBP2_iGluR_AMPA 477..879 CDD:270433 78/388 (20%)
Lig_chan 610..906 CDD:459656 68/339 (20%)
Blue background indicates that the domain is not in the aligned region.

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