DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and gria3b

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:513 Identity:89/513 - (17%)
Similarity:182/513 - (35%) Gaps:140/513 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 ETFANRV-ELYPNKLLNLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSLTFDGAE- 288
            |.|.|.: :.:.|...:::.|:::|.:|...||.:                 :....:..:|.| 
Zfish   393 ERFVNIMDQQFTNDSSSVENRTIVVTTIMEAPYVM-----------------YKKNHMHLEGNEK 440

  Fly   289 ---------ANVMKTFCQVHNCHLRVE---------AYGADNWGGIYDNESSDGMLGDIYEQRVE 335
                     :.:.|        |:.::         .|||.:    .:.:|.:||:|::...|.:
Zfish   441 YEGYCVDLASEIAK--------HVGIKYRLSIVMDGKYGARD----PETKSWNGMVGELVYGRAD 493

  Fly   336 MAIGCIYNWYDGITETSHTIARSSVTILGPAPAPLPSWRTNIM----------------PFNNRA 384
            :|:..:          :.|:.|..|....   .|..|...:||                |.....
Zfish   494 IAVAPL----------TITLVREEVIDFS---KPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEI 545

  Fly   385 WLVLISTLVICGTFLYFM-KYVSYRLRYSGT-QVKFHHSRKLEKSMLDIF-------ALFIQQPS 440
            |:.::...:.....|:.: ::..|..:...| :||...:.....:...||       ..|:||..
Zfish   546 WMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGC 610

  Fly   441 APLSFDRFAPRFFLATILCA-----TITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSA 500
                  ..:||.....|:..     |:.:.:.|:..|.:.||.....:|:::.|..|:.      
Zfish   611 ------DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ------ 663

  Fly   501 PSIIWVHTVQSSDLETEQILARN-FEVHD--YSYLSNVS---FMPNYGFGIERL--SSGSL---- 553
             :.|...|:.|.  .|::...|: ..|::  :||:.:..   |......|:.|:  |.|..    
Zfish   664 -TEIAYGTLDSG--STKEFFRRSKIAVYEKMWSYMKSAEPSVFAKTTPDGVARVRKSKGKFAFLL 725

  Fly   554 --SVGDYVSTEALENRIVLHDDLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDK 616
              ::.:|:......:.:.:..:|........:.:|..|...:|..:....|.||           
Zfish   726 ESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGL----------- 779

  Fly   617 YMDKKKQEVLMDL----ANGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAELL 670
             :||.|.:...|.    :.|...|....||.:.|:||..::|..|:   |.|::..|:
Zfish   780 -LDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGL---GLAMMVALI 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 1/2 (50%)
ANF_receptor 36..379 CDD:279440
PBP2_iGluR_AMPA 412..794 CDD:270433 73/450 (16%)
Lig_chan 544..824 CDD:278489 55/306 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591775
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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