DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and GluRIIE

DIOPT Version :10

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:821 Identity:156/821 - (19%)
Similarity:256/821 - (31%) Gaps:285/821 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LQPLVMHLSQLLRIIVGQYFAEFPSILIVYNNSASTTPLQLEYLSALELVLRELSKPIRLQWINV 67
            |.|....|::.|..::.::  .:...:.:|.::        |||:    :|.||:..:......:
  Fly   138 LHPHPADLAKALYSLITEF--NWTRFIFLYESA--------EYLN----ILNELTTMLGKSGTVI 188

  Fly    68 AFLK---DLNDLEDQVMGALNSSVTEGFITI---------LSQTHH--FIHARY-YATRNANVR- 116
            ..|:   .||....||:..:..||....:.:         |:|...  .|:..| |...|.:.. 
  Fly   189 TVLRYDMQLNGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFHS 253

  Fly   117 --LKDKRY---------LFLCEDESPAELL----------------CMDILQFYPHHLMVRPGTE 154
              |::.:|         ||..|..:..|||                |...::....:..|:...:
  Fly   254 FDLEEYKYSEANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQ 318

  Fly   155 TAPTGPTGPHPDPRRGGGASVSTKN-KDDGEGGAGNKTTSPYRD------INFE----------- 201
            |....|..|.|.     ..|..|:: :|||........|....|      |.||           
  Fly   319 TLKNLPFKPMPQ-----NCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDV 378

  Fly   202 ------------LW-------TQKFVGAVGNLDALLLDAFLPNETFANRVELYPNKLLNLQRRSL 247
                        .|       .|:........|:  :|..|.|:||...:.: |||         
  Fly   379 IELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFDS--VDNSLANKTFIILLSV-PNK--------- 431

  Fly   248 LVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSLTFDGAEANVMKTFCQVHNCHLRVEAYGAD- 311
                    ||                               |.:::|:.|:.. :.:.|.||.| 
  Fly   432 --------PY-------------------------------AQLVETYKQLEG-NSQYEGYGVDL 456

  Fly   312 ---------------NWGGIY------DNESSDGMLGDIYEQRVEMAIGCIYNWYDGITETSHTI 355
                           |.|..|      .|||: |||.:|...|.::||       ..:|.||...
  Fly   457 IKELADKLGFNFTFVNGGNDYGSYNKSTNEST-GMLREIMTGRADLAI-------TDLTITSERE 513

  Fly   356 ARSSVTI-----------LGPAPAPLPSWRTNIMPFNNRAWLVLISTLVICGTFLYFMKYVSYRL 409
            .....||           |.|..| .|...|.:.||:...|..|..:.:  |..|.|  ::..||
  Fly   514 QALDFTIPFMNLGIAILYLKPQKA-TPELFTFMDPFSEEVWWFLGFSFL--GVSLSF--FILGRL 573

  Fly   410 ---RYSGTQVKFHHSRKLEKSMLDIFAL----------FIQQPSAPLSFDRFAPRFFLATILCA- 460
               .:...........:||..    |.|          .:||.|      ...|: .|:|...| 
  Fly   574 SPSEWDNPYPCIEEPEELENQ----FTLGNSIWFTTGALLQQGS------EIGPK-ALSTRTVAS 627

  Fly   461 -----TITLENIYSGQLKSMLTFPFYSAPVDTIEKWA--QSGWKWSAPSIIWVHTVQSSDLETEQ 518
                 |:.:.:.|:..|.:.||.....:.:::::..|  :.|..:.|...........:..|...
  Fly   628 FWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERY 692

  Fly   519 ILARNFEVHDYSYL--------SNVSFMPNYGFGIERLS--------SGSLSVGDYVSTEALENR 567
            .....|...:..||        :.|....:|.|.:|..|        .....:||     ||:.:
  Fly   693 KKMNKFMSENPQYLTEDNMEGVNRVKTNTHYAFLMESTSIEYNTKRECNLKKIGD-----ALDEK 752

  Fly   568 ---IVLHDDLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDL 629
               |.:..|             |....:.|..:...||.|:            ::|.|.:...::
  Fly   753 GYGIAMRKD-------------WPHRGKFNNALLELQEQGV------------LEKMKNKWWNEV 792

  Fly   630 ANG--HKVKGAPQA--LDVRNIAGALFVLAFGVAFAGCALV 666
            ..|  ...:.||.|  ||:.|:.|..|||..|   :.|||:
  Fly   793 GTGICATKEDAPDATPLDMNNLEGVFFVLLVG---SCCALL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605 49/282 (17%)
PBP2_iGluR_Kainate 419..790 CDD:270432 88/474 (19%)
Lig_chan 551..824 CDD:459656 59/317 (19%)

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