DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Gria3

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001106213.1 Gene:Gria3 / 29628 RGDID:70958 Length:888 Species:Rattus norvegicus


Alignment Length:440 Identity:81/440 - (18%)
Similarity:157/440 - (35%) Gaps:106/440 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 HLRVE---AYGADNWGGIYDNESS--DGMLGDIYEQRVEMAIGCIYNWYDGITETSHTIARSSVT 361
            |:|::   :...|...|..|.|:.  :||:|::...|.::|:..:          :.|:.|..|.
  Rat   459 HVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPL----------TITLVREEVI 513

  Fly   362 ILGPAPAPLPSWRTNIM----------------PFNNRAWLVLISTLVICGTFLYFMKYVS---Y 407
            ...   .|..|...:||                |.....|:.::...:.....|:.:...|   :
  Rat   514 DFS---KPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEW 575

  Fly   408 RLRYSGTQVKFHHSRKLEKSMLDIF-------ALFIQQPSAPLSFDRFAPRFFLATILCA----- 460
            .|..:..:.:...|.....:...||       ..|:||..      ..:||.....|:..     
  Rat   576 HLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGC------DISPRSLSGRIVGGVWWFF 634

  Fly   461 TITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLETEQILARN-F 524
            |:.:.:.|:..|.:.||.....:|:::.|..|:.       :.|...|:.|.  .|::...|: .
  Rat   635 TLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ-------TEIAYGTLDSG--STKEFFRRSKI 690

  Fly   525 EVHD--YSYLSNVS---FMPNYGFGIERL--SSGSL------SVGDYVSTEALENRIVLHDDLYF 576
            .|::  :||:.:..   |......|:.|:  |.|..      ::.:|:......:.:.:..:|..
  Rat   691 AVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDS 755

  Fly   577 DYTRAVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDL----ANGHKVKG 637
            ......:.:|..|...:|..:....|.||            :||.|.:...|.    :.|...|.
  Rat   756 KGYGVATPKGSALGNAVNLAVLKLNEQGL------------LDKLKNKWWYDKGECGSGGGDSKD 808

  Fly   638 APQALDVRNIAGALFVLAFGVAFAGCALVAELL---------IHRMDLSK 678
            ...||.:.|:||..::|..|:   |.|::..|:         ..||.|:|
  Rat   809 KTSALSLSNVAGVFYILVGGL---GLAMMVALIEFCYKSRAESKRMKLTK 855

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Gria3NP_001106213.1 PBP1_iGluR_AMPA_GluR3 29..400 CDD:107382
ANF_receptor 40..383 CDD:279440
PBP2_iGluR_AMPA 416..799 CDD:270433 65/379 (17%)
Glutamate binding 502..504 0/11 (0%)
Lig_chan 548..829 CDD:278489 54/307 (18%)