DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and GRIA1

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:610 Identity:110/610 - (18%)
Similarity:194/610 - (31%) Gaps:225/610 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 GGAGNKTTSPY------RDINFELWTQKFVGAVGNL--------------------DALLL---- 219
            |.||:...:|.      .||...|...:|.|..||:                    |.:..    
Human   328 GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYW 392

  Fly   220 ---DAFLPNETFANRVELYPNKLLNLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRS 281
               |.|:|..|.|..    .....::|.|:.:|.:|...||.:..                 ..:
Human   393 NEDDKFVPAATDAQA----GGDNSSVQNRTYIVTTILEDPYVMLK-----------------KNA 436

  Fly   282 LTFDGAE----------ANVMKTFCQVHNCHL----RVE-----AYGADNWGGIYDNESSDGMLG 327
            ..|:|.:          |.:.|        |:    |:|     .|||.:    .|.::.:||:|
Human   437 NQFEGNDRYEGYCVELAAEIAK--------HVGYSYRLEIVSDGKYGARD----PDTKAWNGMVG 489

  Fly   328 DIYEQRVEMAIGCIYNWYDGITETSHTIARSSVTILGPAPAPLPSWRTNIM-------------- 378
            ::...|.::|:..:          :.|:.|..|....   .|..|...:||              
Human   490 ELVYGRADVAVAPL----------TITLVREEVIDFS---KPFMSLGISIMIKKPQKSKPGVFSF 541

  Fly   379 --PFNNRAWLVLISTLVICGTFLYFMKYVSYRLRYSGTQVKFHHSRKLEK--------------- 426
              |.....|:.::...:.....|:.:.      |:|..:   .||.:.|:               
Human   542 LDPLAYEIWMCIVFAYIGVSVVLFLVS------RFSPYE---WHSEEFEEGRDQTTSDQSNEFGI 597

  Fly   427 --SMLDIFALFIQQPSAPLSFDRFAPRFFLATILCA-----TITLENIYSGQLKSMLTFPFYSAP 484
              |:......|:||..      ..:||.....|:..     |:.:.:.|:..|.:.||.....:|
Human   598 FNSLWFSLGAFMQQGC------DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 656

  Fly   485 VDTIEKWA----------QSG-----------------WKW--SAPSIIWVHTVQSSDLETEQIL 520
            :::.|..|          ::|                 |.:  ||...::|.|.:...:...:..
Human   657 IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSK 721

  Fly   521 ARNFEVHDYSYLSNVSFMPNYGFGIE-RLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAVSI 584
            .:      |:||.. |.|..|   || |....::.||..:.::.              |..|.. 
Human   722 GK------YAYLLE-STMNEY---IEQRKPCDTMKVGGNLDSKG--------------YGIATP- 761

  Fly   585 RGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDL----ANGHKVKGAPQALDVR 645
            :|..|...:|..:....|.||            :||.|.:...|.    :.|...|....||.:.
Human   762 KGSALRNPVNLAVLKLNEQGL------------LDKLKNKWWYDKGECGSGGGDSKDKTSALSLS 814

  Fly   646 NIAGALFVLAFGVAFAGCALVAELL 670
            |:||..::|..|:   |.|::..|:
Human   815 NVAGVFYILIGGL---GLAMLVALI 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385 13/70 (19%)
ANF_receptor 47..382 CDD:279440 11/53 (21%)
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 80/474 (17%)
Lig_chan 548..827 CDD:278489 59/330 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156058
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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