DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grin2d

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:841 Identity:160/841 - (19%)
Similarity:264/841 - (31%) Gaps:289/841 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LIVYNNSASTTPLQL-----EYLSALELVLRELSKPIRLQWINV-----------AFLKDLNDLE 77
            |::......:|.|||     :.|..:..||.|      ..|.:.           |||..:..|.
  Rat   147 LVLTPKEKGSTFLQLGSSTEQQLQVIFEVLEE------YDWTSFVAVTTRAPGHRAFLSYIEVLT 205

  Fly    78 DQVMGALNSSVTEGFITILSQTHHFIHARYYATRNANVRLKDKRYLFLCEDESPAELLCMDILQF 142
            |   |:|......|.:|:.......:......:.:|.:||     ||...:|:..          
  Rat   206 D---GSLVGWEHRGALTLDPGAGEAVLGAQLRSVSAQIRL-----LFCAREEAEP---------- 252

  Fly   143 YPHHLMVRPGTETAPTGP------TGPHPDPRRGGGASVSTKNKDDGEGGAGNKTTSP------- 194
                 :.|...|...|||      .||.   ..|||          |.|..|.....|       
  Rat   253 -----VFRAAEEAGLTGPGYVWFMVGPQ---LAGGG----------GSGVPGEPLLLPGGSPLPA 299

  Fly   195 ---------YRDINFELWTQKFVG---AVGNLDALLLD-AFLP---------------------- 224
                     :||   :|..:...|   ......|||.| .|||                      
  Rat   300 GLFAVRSAGWRD---DLARRVAAGVAVVARGAQALLRDYGFLPELGHDCRTQNRTHRGESLHRYF 361

  Fly   225 -NETFANR----------------------------VELYPNKLLNLQ----------------R 244
             |.|:.||                            |..:..:.|.|:                .
  Rat   362 MNITWDNRDYSFNEDGFLVNPSLVVISLTRDRTWEVVGSWEQQTLRLKYPLWSRYGRFLQPVDDT 426

  Fly   245 RSLLVGSITYVPYTITNYVPAGQGDVDPIH---------------------PQWPNRSLTFDGAE 288
            :.|.|.::...|:.|..  ||     |||.                     |..|.       .|
  Rat   427 QHLTVATLEERPFVIVE--PA-----DPISGTCIRDSVPCRSQLNRTHSPPPDAPR-------PE 477

  Fly   289 ANVMKTFC------QVHNCHLRVEAYGADNW------GGIYDNESSDGMLGDIYEQRVEMAIGC- 340
            ....|.||      ..|......:.|...|.      .|::     :||:|:::.||.:||||. 
  Rat   478 KRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVW-----NGMIGEVFYQRADMAIGSL 537

  Fly   341 --------IYNWYDGITET--SHTIARSSVTILGPAPAPLPSWRTNIM---PFNNRAWL---VLI 389
                    |.::.....||  |..:|||:.|: .|:.....:|.|..|   |::...|:   |:.
  Rat   538 TINEERSEIVDFSVPFVETGISVMVARSNGTV-SPSAFLAFAWLTPPMSPEPYSPAVWVMMFVMC 601

  Fly   390 STLVICGTFLY-FMKYVSYRLRYSGTQVKFHHSRKLEKSMLDIFALF------IQQPSAPLSFDR 447
            .|:|....|:: ::..|.|....:..:.....:..:.||:..::||.      ::.|....|...
  Rat   602 LTVVAVTVFIFEYLSPVGYNRSLATGKRPGGSTFTIGKSIWLLWALVFNNSVPVENPRGTTSKIM 666

  Fly   448 FAPRFFLATILCATITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPS----IIWVHT 508
            .....|.|.|..|:.|         .::..|......|||:.  ..|..|:..|.    .:...|
  Rat   667 VLVWAFFAVIFLASYT---------ANLAAFMIQEEYVDTVS--GLSDRKFQRPQEQYPPLKFGT 720

  Fly   509 VQSSDLETEQILARNF-EVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHD 572
            |.:.  .||:.:..|: ::|.|....|   .|.....:.:|.:|.|..  ::...|:.|.:...|
  Rat   721 VPNG--STEKNIRSNYPDMHSYMVRYN---QPRVEEALTQLKAGKLDA--FIYDAAVLNYMARKD 778

  Fly   573 DLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFH----WE-------LEFI-DKYMDKKKQEV 625
            :            |..|:...:..:......|:..|    |:       |:|: |..::..::..
  Rat   779 E------------GCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLW 831

  Fly   626 LMDLANGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAELLI-----------HRMD 675
            |..:.:..|::.....||:.|:||..::|...:..:......|.|:           ||||
  Rat   832 LSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLGPTHRMD 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601 57/307 (19%)
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 90/460 (20%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350109
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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