DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grin2c

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_036707.3 Gene:Grin2c / 24411 RGDID:2739 Length:1250 Species:Rattus norvegicus


Alignment Length:603 Identity:119/603 - (19%)
Similarity:217/603 - (35%) Gaps:126/603 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 ILQFYPHHLMVRPGTETAPTGPTGPHPDPRRGGG-------ASVSTKNKD--DGEGGAGNKTTSP 194
            ||....|....:.||..||.|....||.|.....       .:|:.:.:|  ...||...:.|..
  Rat   308 ILALGAHSYRRQYGTLPAPAGDCRSHPGPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVRPTMV 372

  Fly   195 YRDIN-FELWTQKFVGAVGNLDALLLDAFLPNETFANRVELYPNKLLNLQ----RRSLLVGSITY 254
            ...:| ..||..     ||..|..:|....|         ::|....:||    .|.|.|.::..
  Rat   373 VIALNRHRLWEM-----VGRWDHGVLYMKYP---------VWPRYSTSLQPVVDSRHLTVATLEE 423

  Fly   255 VPYTIT------------NYVPA--------GQGDVDPIHPQWPNRSLTFDGAEANVMKTFCQV- 298
            .|:.|.            |.||.        ..||:.|.      ..|...|...:::|...:| 
  Rat   424 RPFVIVESPDPGTGGCVPNTVPCRRQSNHTFSSGDLTPY------TKLCCKGFCIDILKKLAKVV 482

  Fly   299 ---HNCHLRVEAYGADNWGGIYDNESSDGMLGDIYEQRVEMAIGC---------IYNWYDGITET 351
               ::.:|...........|::     :||:|::|.:|.:||||.         |.::.....||
  Rat   483 KFSYDLYLVTNGKHGKRVRGVW-----NGMIGEVYYKRADMAIGSLTINEERSEIIDFSVPFVET 542

  Fly   352 --SHTIARSSVTILGPAPAPLPSWRTNIMPFNNRAWL---VLISTLVICGTFLY-FMKYVSYRLR 410
              |..::||:.|:   :|:..      :.|::...|:   |:..|:|....|:: :...|||...
  Rat   543 GISVMVSRSNGTV---SPSAF------LEPYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQN 598

  Fly   411 YSGTQVKFHHSRKLEKSMLDIFALF------IQQPSAPLSFDRFAPRFFLATILCATITLENIYS 469
            .:..:.....|..:.||:..::||.      |:.|....|........|.|.|..|:.|      
  Rat   599 LTKGKKPGGPSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYT------ 657

  Fly   470 GQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIW----VHTVQSSDLETEQILARNF-EVHDY 529
               .::..|......:||:.  ..|..|:..|...:    ..||.:.  .||:.:..|: ::|.:
  Rat   658 ---ANLAAFMIQEQYIDTVS--GLSDKKFQRPQDQYPPFRFGTVPNG--STERNIRSNYRDMHTH 715

  Fly   530 SYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDD----LYFDYTRAVSIRGWILM 590
            ....|...:.:   .:..|..|.|..  ::...|:.|.:...|:    :.....:..:..|:.:.
  Rat   716 MVKFNQRSVED---ALTSLKMGKLDA--FIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIA 775

  Fly   591 PELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEV-LMDLANGHKVKGAPQALDVRNIAGALFVL 654
            .:.:.|.:...:..|     |:.:.....:|.:.| |..:....|.:.....||:.|:||..::|
  Rat   776 MQKDSHWKRAIDLAL-----LQLLGDGETQKLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYML 835

  Fly   655 AFGVAFAGCALVAELLIH 672
            ...:..|......|.|::
  Rat   836 LVAMGLALLVFAWEHLVY 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grin2cNP_036707.3 PBP1_iGluR_NMDA_NR2 41..397 CDD:380601 23/93 (25%)
PBP2_iGluR_NMDA_Nr2 413..813 CDD:270436 82/442 (19%)
NMDAR2_C 850..>925 CDD:402274 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350137
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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