DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grin3a

DIOPT Version :10

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001263284.1 Gene:Grin3a / 242443 MGIID:1933206 Length:1135 Species:Mus musculus


Alignment Length:819 Identity:153/819 - (18%)
Similarity:261/819 - (31%) Gaps:316/819 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SILIVYNNSASTTPLQLEYLSALELVLR-----------------------ELS-----KPIRLQ 63
            ||:.:..|.:||..|    ||.|::.|.                       |:|     .|..|.
Mouse   293 SIINITANLSSTKDL----LSFLQVQLENIRNSTPTMVMFGCDMGSIRQIFEMSTQFGLSPPDLH 353

  Fly    64 WINVAFLKDLNDLEDQ----------VMGALNSSVTEGFITILSQTHHFIHARYYATRNANVRLK 118
            |:    |.|..::|:.          ..|....||.|.::    |....:.||..||..      
Mouse   354 WV----LGDSQNVEELRTEGLPLGLIAHGKTTQSVFEYYV----QDAMELVARAVATAT------ 404

  Fly   119 DKRYLFLCEDE---SPAELLCMDIL-------QFYPHHLMVRPGTETAPTGPTGPHPDPRRGGGA 173
                  :.:.|   .|:.:.|||:.       |:....|     ..|...|.:|   ..:..|..
Mouse   405 ------MIQPELALLPSTMNCMDVKTTNLTSGQYLSRFL-----ANTTFRGLSG---SIKVKGST 455

  Fly   174 SVSTKNKDDGEGGAGNKTTSPYRDINFELWTQKF--VG-----AVGNLDA--LLLDAFL-PNETF 228
            .||::|                   ||.:|..::  :|     .:|:...  :::|:.: |.:..
Mouse   456 IVSSEN-------------------NFFIWNLQYDPMGKPMWTRLGSWQGGRIVMDSGIWPEQAQ 501

  Fly   229 ANRVEL-YPNKLLNLQRRSLLVGSITYVPYTITNYV------PAGQGDVDPIHPQWPNRSLTFDG 286
            .::... :||||      .|.|.::...|:..|..|      ||||..:||:    .|.|...| 
Mouse   502 RHKTHFHHPNKL------HLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPM----TNDSSILD- 555

  Fly   287 AEANVMKTFCQVHNCHLRVE------AYG----------------------ADNWGGIYDNESSD 323
                  ..|..:|:.:..|.      .||                      .|...|.:.|....
Mouse   556 ------SLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWT 614

  Fly   324 GMLGDIYEQRVEMAIGCIYNWYDGITETSHTIARSSV---------TILG------PAPAPLPSW 373
            |::||:......||          :|..|...|||.|         |.||      ...||:.::
Mouse   615 GLVGDLLSGTANMA----------VTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF 669

  Fly   374 RTNIMPFNNRAWLVLISTLVICGTFLYFMKY------------------------VSYRLRYSGT 414
               :.|.:...||.:...|.|...||...::                        |.|.|.:..|
Mouse   670 ---MWPLHWTMWLGIFVALHITAIFLTLYEWKSPFGMTPKGRNRNKVFSFSSALNVCYALLFGRT 731

  Fly   415 QVKFHHSRKLEKSMLDIFALFIQQPSAPLSFDRFAPRFFLATI---LCATITLENIY---SGQLK 473
            ...........:.:::::|:|..              |.|:|.   |.|.:..|.||   ||...
Mouse   732 AAIKPPKCWTGRFLMNLWAIFCM--------------FCLSTYTANLAAVMVGEKIYEELSGIHD 782

  Fly   474 SMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLETEQILARNF-EVHDYSYLSNVSF 537
            ..|..|             ..|:::.        ||:.|  ..|..:.::| |:|:|....||..
Mouse   783 PKLHHP-------------SQGFRFG--------TVRES--SAEDYVRQSFPEMHEYMRRYNVPA 824

  Fly   538 MPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAV-------------SIRGW-I 588
            .|:   |::.|.:....:..::..:||           .||..::             :|.|: |
Mouse   825 TPD---GVQYLKNDPEKLDAFIMDKAL-----------LDYEVSIDADCKLLTVGKPFAIEGYGI 875

  Fly   589 LMP---ELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDLANGHKVKGAP----------- 639
            .:|   .|..:|.             |.|.:|    |....||:.:....|..|           
Mouse   876 GLPPNSPLTSNIS-------------ELISQY----KSHGFMDVLHDKWYKVVPCGKRSFAVTET 923

  Fly   640 QALDVRNIAGALFVLAFGVAFAGCALVAELLIHRMDLSK 678
            ..:.:::.:|...:|..|...:....:.|.:::|:.|.:
Mouse   924 LQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPR 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grin3aNP_001263284.1 PBP1_iGluR_NMDA_NR3 40..496 CDD:380600 47/253 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..118
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 95/493 (19%)
Lig_chan 674..941 CDD:459656 58/334 (17%)
PPP2CB binding site. /evidence=ECO:0000250|UniProtKB:Q9R1M7 951..987 3/12 (25%)
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1082..1115
Blue background indicates that the domain is not in the aligned region.

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