DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and glr-3

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_492017.3 Gene:glr-3 / 172449 WormBaseID:WBGene00001614 Length:836 Species:Caenorhabditis elegans


Alignment Length:566 Identity:96/566 - (16%)
Similarity:181/566 - (31%) Gaps:187/566 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 GGAGNKTTSPYRDI----NFELWTQKFVGAVGNLDALLLDAFLPNETFANRVELYPNKLLNLQRR 245
            |...|.|...||..    .|..|:.: ...:.:.:|:::         ||..|     .|.|:.:
 Worm   352 GERSNYTLHVYRRTLSFQKFAEWSSR-TRRIASSEAVVI---------ANSSE-----KLTLEGK 401

  Fly   246 SLLVGSITYVPYTITNYVPAGQG-DVDPIHPQWPNRSLTFDGAEANVMKTFCQVHNCHLRVEAYG 309
            .|.:......|:.:.....:.:| .:|.:|            ..||::|....:..  :|..|||
 Worm   402 HLKISVYLEAPFVMITSNGSYEGYCIDLLH------------KIANILKFTYTIQK--VRDNAYG 452

  Fly   310 ADNWGGIYDNESSDGMLGDIYEQRVEMAIGCIYNWYDGITETSHTI--ARSSVTILGPAPAPLPS 372
            :....|.:     .||:|::.....::|:..:...|........|:  ....::||...|....|
 Worm   453 SKESNGKW-----SGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYMHLGISILFKKPRIRDS 512

  Fly   373 -WRTNIMPFNNRAWLVLISTLVICGTFLYFMKYVS-----YRLRYSGTQVKFHHSRKLEKSMLDI 431
             |...:.|.:.:.|::..::..:....::.:..:|     .|...:|......:...|..|....
 Worm   513 DWFKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNGQYKPVDNQFSLRNSFWFT 577

  Fly   432 FALFIQQPSAPLSFDRFAPR-----------FFLATILCATIT---------------LEN---- 466
            ....:||.|      ...||           :|.|.||.::.|               :||    
 Worm   578 VCSLMQQGS------ELCPRAASTRLLTGIWWFFALILISSYTANLAAVLTTRRMETPIENADDL 636

  Fly   467 -----IYSGQLKSMLTFPFYS-APVDTIEKWAQSGWKW--SAPSIIWVHTVQSSDLETEQILARN 523
                 |..|.|....|..|:: :.::|.|:.    |:.  |:|.:.    ||||    ::.:|| 
 Worm   637 AAQTKIKYGTLGRGSTMSFFNESKIETYERM----WQLMSSSPGLF----VQSS----KEGIAR- 688

  Fly   524 FEVHDYSYLSNVSFM-------------------PNYGFGI-------ERLSSGSLSVGDYVSTE 562
            .:..||:||...|.:                   ..||.|:       |.:|:..|.:.:.....
 Worm   689 VKSSDYAYLMESSMLEYAVERDCELMQIGGLIDQKGYGIGLPKGSPYRELISTAILRLQEKTELT 753

  Fly   563 ALENRIVLHDDLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLM 627
            .|:.:                   |                     |:.:.:.....|:|.:.  
 Worm   754 ELKEK-------------------W---------------------WKDKSVVCEQPKRKDQD-- 776

  Fly   628 DLANGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAELLIHR 673
                           |..:|.|...:|..|:......::.||:..|
 Worm   777 ---------------DGESIGGIFIILVVGLVLTAVLVIFELITTR 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
glr-3NP_492017.3 PBP1_iGluR_non_NMDA-like 21..385 CDD:380591 7/33 (21%)
Periplasmic_Binding_Protein_Type_2 401..761 CDD:419667 72/437 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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