DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grin3b

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:814 Identity:161/814 - (19%)
Similarity:267/814 - (32%) Gaps:268/814 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TP--LQLEYLSALELVLRELSKPIRLQ-WINVA-------------------------FLKDLND 75
            ||  |||::.|.||.:|..|...:|.. |.::|                         |:.||:.
Mouse   223 TPFHLQLDWASPLETILDVLVSLVRAHAWEDIALVLCRVRDPSGLVTLWTSRASQAPKFVLDLSQ 287

  Fly    76 LED---------QVMGALNSSVTEGFITIL-----SQTHHFIHARYYATRNANVRLKDKRYLFLC 126
            |:.         .::|.|....|.....:|     :..|..:.|.....:            :|.
Mouse   288 LDSGNDSLRATLALLGTLEGGGTPVSAAVLLGCSTAHAHEVLEAAPPGPQ------------WLL 340

  Fly   127 EDESPAELLCMDILQFYPHHLMVRPGTETAP----TGPTGP------------------------ 163
            ....|||.|               |.|...|    .|.||.                        
Mouse   341 GTPLPAEAL---------------PKTGLPPGVLVLGETGQPSLEAAVHDMVELVARALSSMALM 390

  Fly   164 HP------------DPRRGGGASVS-------TKNKDDGEGG----AGNKTTSPYRDINFELWTQ 205
            ||            |.:.||..|.:       :.....|..|    ||:......|  :|::|:.
Mouse   391 HPERALLPAAVNCEDLKTGGSESTARTLARFLSNTSFQGRTGAVWVAGSSQVHVSR--HFKVWSL 453

  Fly   206 KF--VGA-----VGNLDALLLDAFLPNETFANRVELYPNKLLNLQRRSLLVGSITYVPYTIT--- 260
            :.  :||     ||:.....|| |.|... |.||   |:......|..|.|.::...|:..|   
Mouse   454 RRDPLGAPAWATVGSWQDGQLD-FQPGAA-ALRV---PSPSGTQARPKLRVVTLVEHPFVFTRES 513

  Fly   261 ---NYVPAGQGDVDPIHPQWPNRSLTFD--------GAEANVMKTFCQ----------VHNCHLR 304
               ...||||..:||    ..|.|...|        |:....::..|.          ..:....
Mouse   514 DEDGQCPAGQLCLDP----GTNDSARLDALFTALENGSVPRTLRRCCYGYCIDLLERLAEDLAFD 574

  Fly   305 VEAY--GADNWGGIYDNESSDGMLGDIYEQRVEMAIGCIYNWYDGITETSHTIARSSV------- 360
            .|.|  |...:|.:.|...: |::||:...|..||          :|..|...|||.|       
Mouse   575 FELYIVGDGKYGALRDGRWT-GLVGDLLAGRAHMA----------VTSFSINSARSQVVDFTSPF 628

  Fly   361 --TILG------PAPAPLPSWRTNIMPFNNRAWLVLISTLVICGTFLYFMKYVS-YRL----RYS 412
              |.||      ...:|:.::   :.|.:...|:.:.:.|.:...||...::.| |.|    |..
Mouse   629 FSTSLGIMVRTRDTASPIGAF---MWPLHWSMWVGVFAALHLTALFLTLYEWRSPYGLTPRGRNR 690

  Fly   413 GTQVKFHHSRKLEKSMLDIFALFIQQPSAPLSFDRFAPRFFLATILCATITLENIYSGQLKSML- 476
            ||  .|.:|..|......:|...:...:......||...  |..|.|..:.  :.|:..|.::: 
Mouse   691 GT--VFSYSSALNLCYAILFGRTVSSKTPKCPTGRFLMN--LWAIFCLLVL--SSYTANLAAVMV 749

  Fly   477 ---TFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLETEQILARNF-EVHDYSYLSNVSF 537
               ||...|...|........|:::..   :|    :||   .|..:..:| |:|.:....:...
Mouse   750 GDKTFEELSGIHDPKLHHPSQGFRFGT---VW----ESS---AEAYIKASFPEMHAHMRRHSAPT 804

  Fly   538 MPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAV-------------SIRGW-I 588
            .|:   |:..|:|....:..::..::|           .||..::             :|.|: |
Mouse   805 TPH---GVAMLTSDPPKLNAFIMDKSL-----------LDYEVSIDADCKLLTVGKPFAIEGYGI 855

  Fly   589 LMPE-------LNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDLANGHKVKGAPQALD--V 644
            .:|:       |::.|...:.:|        |||...||..:.|    ..|.:|....:.|.  |
Mouse   856 GLPQNSPLTSNLSEFISRYKSSG--------FIDLLHDKWYKMV----PCGKRVFAVTETLQMGV 908

  Fly   645 RNIAGALFVLAFGVAFAGCALVAELLIHRMDLSK 678
            .:::|...:|..|:..|....:.|.:.:|:.|.:
Mouse   909 YHLSGLFVLLCLGLGSALLTSLGEHVFYRLVLPR 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 55/287 (19%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 90/449 (20%)
Lig_chan 656..922 CDD:365843 59/307 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846615
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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