DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir92a and Grin2d

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_036008580.1 Gene:Grin2d / 14814 MGIID:95823 Length:1345 Species:Mus musculus


Alignment Length:851 Identity:165/851 - (19%)
Similarity:276/851 - (32%) Gaps:275/851 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 IVGQYFAEFPSILIV----YNNSASTTPLQL-----EYLSALELVLRELSKPIRLQWINV----- 67
            :.|::|..:|..:..    :.....:|.|||     :.|..:..||.|      ..|.:.     
Mouse   136 VSGRWFRSWPPAISPKEQGHEKEKGSTFLQLGSSTEQQLQVIFEVLEE------YDWTSFVAVTT 194

  Fly    68 ------AFLKDLNDLEDQVMGALNSSVTEGFITILSQTHHFIHARYYATRNANVRLKDKRYLFLC 126
                  |||..:..|.|   |:|......|.:|:.......:......:.:|.:||     ||..
Mouse   195 RAPGHRAFLSYIEVLTD---GSLVGWEHRGALTLDPGAGEAVLGAQLRSVSAQIRL-----LFCA 251

  Fly   127 EDESPAELLCMDILQFYPHHLMVRPGTETAPTGP------TGPHPDPRRGGGASVSTKNKDDGE- 184
            .:|:..               :.|...|...|||      .|  |....|||:.|      .|| 
Mouse   252 REEAEP---------------VFRAAEEAGLTGPGYVWFMVG--PQLAGGGGSGV------PGEP 293

  Fly   185 ----GGAGNKT------TSPYRDINFELWTQKFVG---AVGNLDALLLD-AFLP----------- 224
                |||....      ::.:||   :|..:...|   ......|||.| .|||           
Mouse   294 LLLPGGAPLPAGLFAVRSAGWRD---DLARRVAAGVAVVARGAQALLRDYGFLPELGHDCRAQNR 355

  Fly   225 ------------NETFANR----------------------------VELYPNKLLNLQ------ 243
                        |.|:.||                            |..:..:.|.|:      
Mouse   356 THRGESLHRYFMNITWDNRDYSFNEDGFLVNPSLVVISLTRDRTWEVVGSWEQQTLRLKYPLWSR 420

  Fly   244 ----------RRSLLVGSITYVPYTITNYVPAGQGDVDPI------------------HPQWPNR 280
                      .:.|.|.::...|:.|..  ||     |||                  |.....|
Mouse   421 YGRFLQPVDDTQHLTVATLEERPFVIVE--PA-----DPISGTCIRDSVPCRSQLNRTHSLVAPR 478

  Fly   281 SLTFDG--AEANVMKTFC------QVHNCHLRVEAYGADNW------GGIYDNESSDGMLGDIYE 331
            |...|.  .|....|.||      ..|......:.|...|.      .|::     :||:|:::.
Mouse   479 SPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVW-----NGMIGEVFY 538

  Fly   332 QRVEMAIGC---------IYNWYDGITET--SHTIARSSVTILGPAPAPLPSWRTNIM---PFNN 382
            ||.:||||.         |.::.....||  |..:|||:.|: .|:.....:|....|   |::.
Mouse   539 QRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTV-SPSAFLAFAWLMPPMSPEPYSP 602

  Fly   383 RAWL---VLISTLVICGTFLY-FMKYVSYRLRYSGTQVKFHHSRKLEKSMLDIFALF------IQ 437
            ..|:   |:..|:|....|:: ::..|.|....:..:.....:..:.||:..::||.      ::
Mouse   603 AVWVMMFVMCLTVVAVTVFIFEYLSPVGYNRSLATGKRPGGSTFTIGKSIWLLWALVFNNSVPVE 667

  Fly   438 QPSAPLSFDRFAPRFFLATILCATITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPS 502
            .|....|........|.|.|..|:.|         .::..|......|||:.  ..|..|:..|.
Mouse   668 NPRGTTSKIMVLVWAFFAVIFLASYT---------ANLAAFMIQEEYVDTVS--GLSDRKFQRPQ 721

  Fly   503 ----IIWVHTVQSSDLETEQILARNF-EVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTE 562
                .:...||.:.  .||:.:..|: ::|.|....|   .|.....:.:|.:|.|..  ::...
Mouse   722 EQYPPLKFGTVPNG--STEKNIRSNYPDMHSYMVRYN---QPRVEEALTQLKAGKLDA--FIYDA 779

  Fly   563 ALENRIVLHDDLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFH----WE-------LEFI-D 615
            |:.|.:...|:            |..|:...:..:......|:..|    |:       |:|: |
Mouse   780 AVLNYMARKDE------------GCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGD 832

  Fly   616 KYMDKKKQEVLMDLANGHKVKGAPQALDVRNIAGALFVLAFGVAFAGCALVAELLI--------- 671
            ..::..::..|..:.:..|::.....||:.|:||..::|...:..:......|.|:         
Mouse   833 DEIEMLERLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLG 897

  Fly   672 --HRMD 675
              ||||
Mouse   898 PTHRMD 903

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grin2dXP_036008580.1 Periplasmic_Binding_Protein_type1 <156..415 CDD:415822 58/298 (19%)
PBP2_iGluR_NMDA_Nr2 432..849 CDD:270436 91/459 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846594
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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