DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grik3

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:795 Identity:155/795 - (19%)
Similarity:271/795 - (34%) Gaps:236/795 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LQPLVMHLSQLLRIIVGQYFAEFPSILIVYNNSASTTPLQLEYLSA-----LELVLREL------ 56
            |...::.|.|.|:         :.|..:||::|.....|| |.:.|     :.|.:|:|      
Mouse   159 LSHAILDLVQSLK---------WRSATVVYDDSTGLIRLQ-ELIMAPSRYNIRLKIRQLPIDSDD 213

  Fly    57 SKPIRLQWINVAFLKDLNDLED--------QVMGA--LNSSVTEGFITILSQTHHFIHAR--YYA 109
            |:|:         ||::....:        ..|.|  |..::..|.:|   :.:|||...  .||
Mouse   214 SRPL---------LKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMT---EYYHFIFTTLDLYA 266

  Fly   110 T-----RNANVRLKDKRYLFLCEDESP-----AELLCMDILQFYPH------------------- 145
            .     |.:.|.|...|.|.:   ::|     .|...|:.||..|.                   
Mouse   267 LDLEPYRYSGVNLTGFRILNV---DNPHVSAIVEKWAMERLQAAPRAESGLLDGVMMTDAALLYD 328

  Fly   146 --HLMVRPGTETAPTGPTGPHPDPR----RGGGASVSTKNKDDGEGGAG----NKTTSPYRDINF 200
              |: |....:.||..........|    |.||..::...:...||..|    |||:....|.:.
Mouse   329 AVHI-VSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDL 392

  Fly   201 ELWTQK-----FVGAVGNLDALLLDAFLPNETFANRVELYPNKLLNLQRRSLLVGSITYVPYTIT 260
            ::.:.|     .||.....|.|.:     .|....|   .||...:|..|||:|.::...|:.:.
Mouse   393 DIISLKEDGLEKVGVWSPADGLNI-----TEVAKGR---GPNVTDSLTNRSLIVTTVLEEPFVMF 449

  Fly   261 NYVPAGQGDVDPIHPQWPNRSL----TFDGAEANVMKTFCQVHNCHLRVEAYGADNWGGIYDNES 321
                           :..:|:|    .|:|...:::|....:......:.......:|...|...
Mouse   450 ---------------RKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQ 499

  Fly   322 SDGMLGDIYEQRVEMAIG--CIYNWYDGITETSHTIARSSVTILGPAP-APLPSWRTNIMPFNNR 383
            .:||:.::.:.:.::|:.  .|.:..:...:.|.......|:||...| ...||..:.:.|.:..
Mouse   500 WNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPD 564

  Fly   384 AWL-VLISTL-VICGTFLY--FMKYVSYRLR--YSGTQVKFHHSRKLEKSMLDIFALFIQQPSAP 442
            .|: ||::.| |.|..|:.  |..|..|...  ..|::|..::...|......:.:| :||.|  
Mouse   565 IWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSL-MQQGS-- 626

  Fly   443 LSFDRFAPR------------FFLATI-------LCATITLENIYS----------------GQL 472
                ...|:            ||...|       |.|.:|:|.:.|                |.:
Mouse   627 ----ELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAV 687

  Fly   473 KSMLTFPFY-SAPVDTIEK-WAQSGWKWSAPSIIWVHTVQSSDLETEQILARNFEVHDYSYL--- 532
            |...|..|: .:.:.|.|| ||   :..|.||.:    |::::...::.|..     ||:.|   
Mouse   688 KDGATMTFFKKSKISTFEKMWA---FMSSKPSAL----VKNNEEGIQRTLTA-----DYALLMES 740

  Fly   533 SNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAVSIRGWILMPELNKHI 597
            :.:.::......:.::.....|.|..:.|           .:...|...::|....|..|...||
Mouse   741 TTIEYITQRNCNLTQIGGLIDSKGYGIGT-----------PMGSPYRDKITIAILQLQEEDKLHI 794

  Fly   598 RTCQETGLYFHWELEFIDKYMDKKKQEVLMDLANGHKVKGAPQ-------ALDVRNIAGALFVLA 655
            .                     |:|         ..:..|.|:       ||.::.|.|...|||
Mouse   795 M---------------------KEK---------WWRGSGCPEEENKEASALGIQKIGGIFIVLA 829

  Fly   656 FGVAFAGCALVAELL 670
            .|:..:....|.|.:
Mouse   830 AGLVLSVLVAVGEFI 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 60/288 (21%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 78/442 (18%)
Glutamate binding. /evidence=ECO:0000250 690..692 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846608
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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