DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir92a and Grik2

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:836 Identity:155/836 - (18%)
Similarity:275/836 - (32%) Gaps:274/836 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LQPLVMHLSQLLRIIVGQYFAEFPSILIVYNNSASTTPLQLEYLSA-----LELVLREL------ 56
            |.|....||:.:..:| |:| ::.::.:||::|.....|| |.:.|     |.|.:|:|      
Mouse   149 LYPDFSSLSRAILDLV-QFF-KWKTVTVVYDDSTGLIRLQ-ELIKAPSRYNLRLKIRQLPADTKD 210

  Fly    57 SKPI-----RLQWINVAFLKDLNDLEDQVMGALNSSVTEGFITILSQTHHFIHA----------- 105
            :||:     |.:..:|.|  |.:  .:...|.|..::..|.:|   :.:|:|..           
Mouse   211 AKPLLKEMKRGKEFHVIF--DCS--HEMAAGILKQALAMGMMT---EYYHYIFTTLDLFALDVEP 268

  Fly   106 -RYYATRNANVRLKDKRYLFLCEDESPAELLCMDILQFYPHHLMVRPGTETAPTGPTGPHPD--- 166
             ||........|:.:...   .:..|..|...|:.||              ||     |.||   
Mouse   269 YRYSGVNMTGFRILNTEN---TQVSSIIEKWSMERLQ--------------AP-----PKPDSGL 311

  Fly   167 ----------------------------------------PRRGGGASVSTKNKDDGEGGAG--- 188
                                                    |.|.|...:|...:...||..|   
Mouse   312 LDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRIT 376

  Fly   189 -NKTTSPYRDINFELWTQKFVG--AVGNLDALLLDAFLPNETFANRVELYPNKLLN----LQRRS 246
             |||.....|.:.::.:.|..|  .:|..|        |:... |..|....|..|    |..||
Mouse   377 FNKTNGLRTDFDLDVISLKEEGLEKIGTWD--------PSSGL-NMTESQKGKPANITDSLSNRS 432

  Fly   247 LLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSLTFDGAEANVMKTFCQVHNCHLRVEAYGAD 311
            |:|.:|...||.:..     :.|    .|.:.|.  .|:|...::::....:......:......
Mouse   433 LIVTTILEEPYVLFK-----KSD----KPLYGND--RFEGYCIDLLRELSTILGFTYEIRLVEDG 486

  Fly   312 NWGGIYD-NESSDGMLGDIYEQRVEMAIGCIYNWY--DGITETSHTIARSSVTILGPAP-APLPS 372
            .:|...| |...:||:.::.:.:.::|:..:...|  :.:.:.|.......::||...| ...|.
Mouse   487 KYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPG 551

  Fly   373 WRTNIMPFNNRAWL-VLISTL-VICGTFLYFMKYVSYRLRYSGTQVKFHHSRK------LEKSM- 428
            ..:.:.|.:...|: :|::.| |.|..|:...:......:|.... .:|||::      ||..| 
Mouse   552 VFSFLNPLSPDIWMYILLAYLGVSCVLFVIARQSKFSWFKYPNCS-HYHHSQRCLCTQHLESYME 615

  Fly   429 LDIFALF-------------------------------IQQPSAPLSFDRFAPR-------FFLA 455
            |.:|:.:                               :.|..:.|.....:.|       ||  
Mouse   616 LCLFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFF-- 678

  Fly   456 TILCATITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQ------------------SGWKWSAPS 502
                 |:.:.:.|:..|.:.||.....:|:|:.:..|:                  ...|.|...
Mouse   679 -----TLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYD 738

  Fly   503 IIWVH--------TVQSSDLETEQILARNFEVHDYSYL---SNVSFMPNYGFGIERLSSGSLSVG 556
            .:|..        .|:|::...:::|     ..||::|   :.:.|:......:.::.....|.|
Mouse   739 KMWAFMSSRRQSVLVKSNEEGIQRVL-----TSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKG 798

  Fly   557 DYVSTEALENRIVLHDDLYFDYTRAVSIRGWILMPELNKHIRTCQETGLYFHWELEFIDKYMDKK 621
            ..|.|           .:...|...::|.           |...||.|          ..:|.|:
Mouse   799 YGVGT-----------PMGSPYRDKITIA-----------ILQLQEEG----------KLHMMKE 831

  Fly   622 KQEVLMDLANGHKVKGAPQ-------ALDVRNIAGALFVLAFGVAFAGCALVAELL 670
            |         ..:..|.|:       ||.|:||.|...|||.|:..:....|.|.|
Mouse   832 K---------WWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFL 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 60/305 (20%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 76/469 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846629
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.