DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and Grik1

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:844 Identity:164/844 - (19%)
Similarity:275/844 - (32%) Gaps:311/844 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LQPLVMHLSQLLRIIVGQYFAEFPSILIVYNNSASTTPLQLEYLSA-----LELVLREL------ 56
            |.|....:|:.:..:|..|  .:.::.:||.:|.....|| |.:.|     :::.:|:|      
Mouse   150 LYPDYAAISRAVLDLVLYY--NWKTVTVVYEDSTGLIRLQ-ELIKAPSRYNIKIKIRQLPSGNKD 211

  Fly    57 SKPIRLQWINVAFLKDLN---------DLEDQVMGALNSSVTEGFITILSQTHHFIHARYYAT-- 110
            :||:         ||::.         |...:....:...:.  |:.::::.:|:    ::.|  
Mouse   212 AKPL---------LKEMKKGKEFYVIFDCSHETAAEILKQIL--FMGMMTEYYHY----FFTTLD 261

  Fly   111 ---------RNANVRLKDKRYLFLCEDESP-----AELLCMDILQFYPHHLMVRPGTETAPTGPT 161
                     |.:.|.:...|.|.:   ::|     .|...|:.||..|     ||.|.......|
Mouse   262 LFALDLELYRYSGVNMTGFRLLNI---DNPHVSSIIEKWSMERLQAPP-----RPETGLLDGVMT 318

  Fly   162 --------------------------------------GPH-----PDPRRGGGASVSTKNKDDG 183
                                                  ||.     .:.|..|.....|.||.||
Mouse   319 TEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDG 383

  Fly   184 -------------EGGAGNKTTSPYRDINFELWTQKFVGAVGNLDALLLDAFLPNETFANRVELY 235
                         |.|. .|.:.......:::|  |.:|...:...|       |.|..|| :..
Mouse   384 LRKDFDLDIISLKEEGT-EKASGEVSKHLYKVW--KKIGIWNSNSGL-------NMTDGNR-DRS 437

  Fly   236 PNKLLNLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSLTFDGAEANVMKTFCQVHN 300
            .|...:|..|:|:|.:|...||.:..     :.|    .|.:.|.  .|:|...:::|....:..
Mouse   438 NNITDSLANRTLIVTTILEEPYVMYR-----KSD----KPLYGND--RFEGYCLDLLKELSNILG 491

  Fly   301 CHLRVE-----AYGADNWGGIYDNESSDGMLGDIYEQRVEMAIGCIYNWY--DGITETSHTIARS 358
            ....|:     .|||.|     |....:||:.::.:.|.::|:..:...|  :.:.:.|......
Mouse   492 FLYDVKLVPDGKYGAQN-----DKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL 551

  Fly   359 SVTILGPAP-APLPSWRTNIMPFNNRAWL-VLISTL-VICGTFLY--FMKYVSYRLR--YSGTQV 416
            .::||...| ...|...:.:.|.:...|: ||::.| |.|..|:.  |..|..|...  ...:.|
Mouse   552 GISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDV 616

  Fly   417 KFHHSRKLEKSMLDIFALFIQQPSAPLSFDRFAPR------------FFLATI-------LCATI 462
            ..::...|......:.|| :||.|      ...|:            ||...|       |.|.:
Mouse   617 VENNFTLLNSFWFGVGAL-MQQGS------ELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFL 674

  Fly   463 TLENIYS----------------GQLK--SMLTFPFYSAPVDTIEK-WA-QSGWKWSAPSIIWVH 507
            |:|.:.|                |.::  |.:|| |..:.:.|.|| || .|..:.||       
Mouse   675 TVERMESPIDSADDLAKQTKIEYGAVRDGSTMTF-FKKSKISTYEKMWAFMSSRQQSA------- 731

  Fly   508 TVQSSDLETEQILARNFEVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHD 572
            .|::||...:::|..     ||:.|               :.|.|:   :||:.           
Mouse   732 LVKNSDEGIQRVLTT-----DYALL---------------MESTSI---EYVTQ----------- 762

  Fly   573 DLYFDYTRAVSIRGWILMPELNKHIRTCQET---GLYFHWELEFIDK------------YMDKKK 622
                                     |.|..|   ||        ||.            |.||..
Mouse   763 -------------------------RNCNLTQIGGL--------IDSKGYGVGTPIGSPYRDKIT 794

  Fly   623 QEVLMDLANG--HKVK-------GAPQ-------ALDVRNIAGALFVLAFGVAFAGCALVAELL 670
            ..:|.....|  |.:|       |.|:       ||.|.||.|...|||.|:..:....:.|.:
Mouse   795 IAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFI 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 53/316 (17%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 93/466 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846564
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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