DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir92a and Grid1

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:659 Identity:117/659 - (17%)
Similarity:215/659 - (32%) Gaps:196/659 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 EGFITILSQTHHFIHARYYATRNA-NVRLKDKRYLFLCEDESPAELLCMDILQFYPHHLMVRPGT 153
            ||::.:|..::.:::.......|| :.:|:|:::      .|.|.|.|            :|..|
Mouse   310 EGYLQMLQISNLYLYDSVLMLANAFHRKLEDRKW------HSMASLNC------------IRKST 356

  Fly   154 ETAPTGPTGPHPDPRRGGGASVSTKNKDDGEGGAG-----NKTTSPYRDINFELWTQKFVGAVGN 213
            :            |..||.:.:.|..|....|..|     ..:::||  :.||:....:      
Mouse   357 K------------PWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPY--VQFEILGTTY------ 401

  Fly   214 LDALLLDAFLPNETFANRVELY----PNKLLN-----------LQRRSLLVGSITYVPYTITNYV 263
                       :|||...:...    ..|.||           ||..:|.|.::...|:.:....
Mouse   402 -----------SETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVMVAEN 455

  Fly   264 PAGQGDVDPIHPQWPNRSLTFDGAEANVMKTFCQVHNCHLRVEAYGADN--WGGIYDNESSDGML 326
            ..||          |.|   :.|...:|:....:.  ...:.|.|.|.:  :|....|.|.:||:
Mouse   456 ILGQ----------PKR---YKGFSIDVLDALAKA--LGFKYEIYQAPDGRYGHQLHNTSWNGMI 505

  Fly   327 GDIYEQRVEMAIGC--IYNWYDGITETSHTIARSSVTILGPAPAPLPSWRTNIMPFNNRAWLVLI 389
            |::..:|.::||..  |....:.:.:.|......||.||...|....|..:...||:...|..:.
Mouse   506 GELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAVWACIA 570

  Fly   390 STLVICGTFLYFMKYVSYRLRYSGTQVKFHHSRKLEKSMLDIFALFIQQPSAPLSFDRFAPRFFL 454
            :.:.:.|..::.:..:......|.||.:...|..|..::..::..|:|| ....|.:..|.|..:
Mouse   571 AAIPVVGVLIFVLNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQQ-GGESSVNSVAMRIVM 634

  Fly   455 ATILCATITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLETEQI 519
            .:....|:.:.:.|:..|.:.||......|:.|.:.                   .|..||....
Mouse   635 GSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQD-------------------LSKQLEMSYG 680

  Fly   520 LARNFEVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAVSI 584
            ..|:..|::|....                          .|..||     .|..:.:..|.:|.
Mouse   681 TVRDSAVYEYFRAK--------------------------GTNPLE-----QDSTFAELWRTISK 714

  Fly   585 RGWI--LMPELNKHIRTCQETGLYFHWELEFID-------------------------------K 616
            .|..  .:...::.||..::....|.|::..::                               .
Mouse   715 NGGADNCVSNPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSP 779

  Fly   617 YMDKKKQEVL---------------------MDLANGHKVKGAPQALDVRNIAGALFVLAFGVAF 660
            |.|...|.:|                     .||.:....:...::|.:.:.||...:||.|:..
Mouse   780 YRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSTQTEGKSLKLHSFAGVFCILAIGLLL 844

  Fly   661 AGCALVAEL 669
            |  .|||.|
Mouse   845 A--CLVAAL 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 31/174 (18%)
PBP1_iGluR_delta_1 25..423 CDD:107387 29/161 (18%)
PBP2_iGluR_delta_1 436..806 CDD:270448 72/435 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846306
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.