DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and GRIN3B

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:656 Identity:128/656 - (19%)
Similarity:219/656 - (33%) Gaps:210/656 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 RLKDKRYLFLCEDESPAELLCMDILQFYPH---HLMVRPGTETAPTGPTGP-------------- 163
            :::.||.|.      ||.:.|.|:....|.   ..:.|....|:..|.|||              
Human   309 QVQPKRALL------PAPVNCGDLQPAGPESPGRFLARFLANTSFQGRTGPVWVTGSSQVHMSRH 367

  Fly   164 ------HPDPRRGGGASVSTKNKDDGE-----GGAGNKTTSPYRDINFELWTQKFVGAVGNLDAL 217
                  ..|| ||..|..:..:..||:     |||..:...|.   ..::|.:  :..|..|:..
Human   368 FKVWSLRRDP-RGAPAWATVGSWRDGQLDLEPGGASARPPPPQ---GAQVWPK--LRVVTLLEHP 426

  Fly   218 LLDAFLPNETFANRVELYPNKLLNLQRRSLLVGSITYVPYTITNYVPAGQGDVDPIHPQWPNRSL 282
            .:.|..|:|                                 ....||||..:||    ..|.|.
Human   427 FVFARDPDE---------------------------------DGQCPAGQLCLDP----GTNDSA 454

  Fly   283 TFD--------GAEANVMKTFCQ----------VHNCHLRVEAY--GADNWGGIYDNESSDGMLG 327
            |.|        |:....::..|.          ..:.....|.|  |...:|.:.|...: |::|
Human   455 TLDALFAALANGSAPRALRKCCYGYCIDLLERLAEDTPFDFELYLVGDGKYGALRDGRWT-GLVG 518

  Fly   328 DIYEQRVEMAIGCIYNWYDGITETSHTIARSSV---------TILG------PAPAPLPSWRTNI 377
            |:...|..||          :|..|...|||.|         |.||      ...:|:.::   :
Human   519 DLLAGRAHMA----------VTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPIGAF---M 570

  Fly   378 MPFNNRAWLVLISTLVICGTFLYFMKYVS-YRL--RYSGTQVKFHHSRKLEKSMLDIFALFIQQ- 438
            .|.:...||.:.:.|.:...||...::.| |.|  |.......|.:|..|......:|...:.. 
Human   571 WPLHWSTWLGVFAALHLTALFLTVYEWRSPYGLTPRGRNRSTVFSYSSALNLCYAILFRRTVSSK 635

  Fly   439 ----PSAPLSFDRFAPRFFLATILCATITLENIYSGQLKSML----TFPFYSAPVDTIEKWAQSG 495
                |:..|..:.:|       |.|..:.  :.|:..|.:::    ||...|...|........|
Human   636 TPKCPTGRLLMNLWA-------IFCLLVL--SSYTANLAAVMVGDKTFEELSGIHDPKLHHPAQG 691

  Fly   496 WKWSAPSIIWVHTVQSSDLETEQILARNF-EVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYV 559
            :::..   :|    :||   .|..:.::| ::|.:....:....|.   |:..|:|....:..::
Human   692 FRFGT---VW----ESS---AEAYIKKSFPDMHAHMRRHSAPTTPR---GVAMLTSDPPKLNAFI 743

  Fly   560 STEALENRIVLHDDLYFDYTRAV-------------SIRGW-ILMPE-------LNKHIRTCQET 603
            ..::|           .||..::             :|.|: |.:|:       |::.|...:.:
Human   744 MDKSL-----------LDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSS 797

  Fly   604 GLYFHWELEFIDKYMDKKKQEVLMDLANGHKVKGAPQAL--DVRNIAGALFVLAFGVAFAGCALV 666
            |        |||...||..:.|    ..|.:|....:.|  .:.:.||...:|..|:   |.||:
Human   798 G--------FIDLLHDKWYKMV----PCGKRVFAVTETLQMSIYHFAGLFVLLCLGL---GSALL 847

  Fly   667 AELLIH 672
            :.|..|
Human   848 SSLGEH 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372 24/102 (24%)
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 89/486 (18%)
Lig_chan 576..842 CDD:278489 57/310 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156192
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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