DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and grin2b

DIOPT Version :9

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:543 Identity:103/543 - (18%)
Similarity:195/543 - (35%) Gaps:117/543 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 DALLLDAFLPNETFANR--------VELYPNK---LLNLQRRSLLVG-------SITYVPYTITN 261
            :|.:|..:|.|.||..|        .:::|..   |||.||:...||       .:.|..:.:..
 Frog   326 EAHMLKRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNQQRKWERVGKYKDRSLKMKYYVWPVFE 390

  Fly   262 YVPAGQ--------------------GDVDPI-----------HPQWPNRSLTFDGAEANVMKTF 295
            ..|..:                    .||||:           ..|....:.|.:|  .|.:|..
 Frog   391 LYPNSEEHKDEHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQIRTENRTEEG--GNYIKRC 453

  Fly   296 CQ----------VHNCHLRVEAYGADNW-GGIYDNESSDGMLGDIYEQRVEMAIGCIYNWYDGIT 349
            |:          ........:.|...|. .|...|.:.:||:|::..:|..||:|.:     .|.
 Frog   454 CKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVTKRAYMAVGSL-----TIN 513

  Fly   350 ETSHTIARSSVTILGPAPAPLPSWRTN--------IMPFNNRAWLVL-ISTLVICGTFLYFMKY- 404
            |....:...||..:....:.:.| |:|        :.||:...|::: :..|::....::..:| 
 Frog   514 EERSEVVDFSVPFIETGISVMVS-RSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYF 577

  Fly   405 --VSYRLRYSGTQVKFHHSRKLEKSMLDIFALF------IQQPSAPLSFDRFAPRFFLATILCAT 461
              |.|....:..:.....|..:.|::..::.|.      :|.|....|....:...|.|.|..|:
 Frog   578 SPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLAS 642

  Fly   462 ITLENIYSGQLKSMLTFPFYSAPVDTIEKWAQSGWKWSAPS----IIWVHTVQSSDLETEQILAR 522
            .|         .::..|......||.:.  ..|..|:..|:    .....||.:.  .||:.:..
 Frog   643 YT---------ANLAAFMIQEEYVDQVS--GLSDKKFQRPNDFSPAFRFGTVPNG--STERNIRN 694

  Fly   523 NF-EVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAVSIRG 586
            |: |:|.|....|...:.:   .:..|.:|.|..  ::...|:.|.:...|    :..:.|:|..
 Frog   695 NYLEMHSYMVKFNQRSVQD---ALLSLKTGKLDA--FIYDAAVLNYMAGRD----EGCKLVTIGS 750

  Fly   587 WILMPELNKHIRTCQETGLYFHWELEFIDKYMDKKKQEV----LMDLANGHKVKGAPQALDVRNI 647
            ..:.......|...:::|.....:|..:..:.|.:.:|:    |..:.:..|.:.....||:.|:
 Frog   751 GKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDNM 815

  Fly   648 AGALFVLAFGVAFAGCALVAELL 670
            ||..::||..:|.:....:.|.|
 Frog   816 AGVFYMLAAAMALSLITFIMEHL 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 15/56 (27%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 75/429 (17%)
NMDAR2_C 837..1449 CDD:402274 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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