DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir92a and grin3bb

DIOPT Version :10

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:512 Identity:106/512 - (20%)
Similarity:181/512 - (35%) Gaps:147/512 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 LLVGSITYVPYTITNYV------PAGQGDVDPIHPQWPNRSLTFD-----GAEANVMKTF----- 295
            |.|.::...|:..|..|      ||||..:|    ...|.|.|.|     .|:.|  |:|     
Zfish   458 LRVVTLVEHPFVFTREVDEDGNCPAGQYCLD----AGTNSSETLDHLYAERAQGN--KSFLPPDY 516

  Fly   296 --CQVHNC-----------HLRVEAY--GADNWGGIYDNESSDGMLGDIYEQRVEMAIGCIYNWY 345
              |....|           :...:.|  |...:|.:...:.: |::||:.....:||        
Zfish   517 SKCCYGYCIDLLEKLSEDMNFEFDLYIVGDGKYGAVKGGQWT-GLVGDLLSGVADMA-------- 572

  Fly   346 DGITETSHTIARSSV---------TILG------PAPAPLPSWRTNIMPFNNRAWLVLISTLVIC 395
              :|..|...|||.|         |.||      ...||:.::   :.|.:...|:.:...|.|.
Zfish   573 --VTSFSINSARSKVIDFTSPFFSTSLGILVRSKDTAAPIGAF---MWPLHWSMWMGIFVALHIT 632

  Fly   396 GTFLYFMKYVS-YRLRYSG-TQVK-FHHSRKLEKSMLDIFALFIQQPSAPLSFDRFAPRFFLATI 457
            ..||...::.| :.:...| .:|| |.:|..|......:|...:...:......||...  |..|
Zfish   633 ALFLTLYEWKSPFGMTPHGRNRVKVFSYSSALNLCYAILFGRTVSSKTPKCWTGRFLMN--LWAI 695

  Fly   458 LCATITLENIYSGQLKSML----TFPFYSAPVDTIEKWAQSGWKWSAPSIIWVHTVQSSDLETEQ 518
            .|..:.  :.|:..|.:::    ||...|...|........|:::.        ||:.|  ..|.
Zfish   696 FCLLVL--SSYTANLAAVMVGEKTFEEVSGIHDAKLHHPSQGFRFG--------TVRES--SAED 748

  Fly   519 ILARNF-EVHDYSYLSNVSFMPNYGFGIERLSSGSLSVGDYVSTEALENRIVLHDDLYFDYTRAV 582
            .:.::| |:|:|....|....|:   |:..|.:....:..::..:||           .||..::
Zfish   749 YMKKSFPEMHEYMRKFNEPTTPD---GVATLKTDPPQLDAFIMDKAL-----------LDYEVSI 799

  Fly   583 -------------SIRGW-ILMPE---LNKHIRTCQETGLYFHWELEFIDKYMDKKKQEVLMDLA 630
                         :|.|: |.:|:   |..:|.             ||:.:|    |.:..||:.
Zfish   800 DADCKLLTVGKPFAIEGYGIGLPQNSPLTSNIS-------------EFVSRY----KSDGYMDML 847

  Fly   631 N---------GHKVKGAPQALD--VRNIAGALFVLAFGVAFAGCALVAELLIHRMDL 676
            :         |.:|....:.|.  :|:.:|...:|..||..|...|..|...:|:.|
Zfish   848 HDKWYKVVPCGKRVFAVTETLQMGIRHFSGLFVLLCVGVTGALLTLAGEHAFYRLVL 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
grin3bbXP_017213803.2 Periplasmic_Binding_Protein_type1 39..427 CDD:471960
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 93/458 (20%)
Lig_chan 618..885 CDD:459656 59/311 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.