DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir92a and gria4

DIOPT Version :10

Sequence 1:NP_001097845.2 Gene:Ir92a / 42415 FlyBaseID:FBgn0038789 Length:678 Species:Drosophila melanogaster
Sequence 2:XP_031751480.1 Gene:gria4 / 100125052 XenbaseID:XB-GENE-5838893 Length:902 Species:Xenopus tropicalis


Alignment Length:165 Identity:31/165 - (18%)
Similarity:56/165 - (33%) Gaps:59/165 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 YIFFWDPSTNPMQQKTQTIDTLI--IP-------DHLAIRLANRSEVPASRFFHTFYQHLVQDRV 108
            |:........|:..|...::..:  :|       :||.|.|:.:||.      ..:..::...|.
 Frog   238 YVVLMGEMQEPVMPKPTELEEQLHSLPYWRTDGHNHLIINLSRKSET------QNYLYNVSTGRA 296

  Fly   109 VKIRKEVQISESTNLTKLIELYHQQQQQQQQHRPG-----------------KQSPPDGPLS--- 153
            :       |::||       .|      ..|:|||                 .:.||..|:.   
 Frog   297 M-------IAQST-------FY------DLQYRPGFDIVVSPLVHAMSEPNFLEIPPQVPVKRKY 341

  Fly   154 -YQVQAEQQPGGRAS-DGPRLHTDEDDGS--DDYE 184
             :..|.|:....|:| ...|...:|.:|:  .||:
 Frog   342 LFSFQGEKIESLRSSLQEARSFEEEMEGNAPADYD 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir92aNP_001097845.2 None
gria4XP_031751480.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 31/165 (19%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445
Blue background indicates that the domain is not in the aligned region.

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