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Protein Alignment CG4360 and Zfp54

DIOPT Version :9

Sequence 1:	NP_650879.1	Gene:	CG4360 / 42413	FlyBaseID:	FBgn0038787	Length:	556	Species:	Drosophila melanogaster
Sequence 2:	NP_001100937.1	Gene:	Zfp54 / 308232	RGDID:	1307738	Length:	586	Species:	Rattus norvegicus

Alignment Length:	455	Identity:	136/455 - (29%)
Similarity:	184/455 - (40%)	Gaps:	119/455 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly   135 VDDPRKKKQCHVCKNKFRQLTTLRNHMKIH----TDERPYKCKHCDKAFRQISTLTNHVKIHTGE 195
            :|...|..:|::|...|.|.::|:.|.|.|    ...:||||..|:|:|..:|.|.:|.|.||||
  Rat   206 IDTGNKPYKCNICDKSFTQCSSLKTHRKTHQRLRAGTKPYKCSDCEKSFSYLSALKSHQKRHTGE 270

  Fly   196 KPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPQTGSGKHRKSQMHQAYQQQHQRVQ 260
            |.:.|..|.|.:..::.|..|.|.|.|.|        .|     |.:|.....||.   .|
  Rat   271 KRYKCKECDKSYAYRTGLKRHQKIHTAKE--------RY-----SCQHCGKVFHQL---SH---- 315

  Fly   261 ISKTLYSGSYSSPAAEELVKPFQCSVCKRRFPQ----------------------------LSTL 297
                 :...::..:||   ||::|:.|.|.||.                            ||.|
  Rat   316 -----FKSHFTVHSAE---KPYKCNECHRSFPHYVFFRRHKKNHSLQKSHKCKECGKSFFILSHL 372

  Fly   298 HNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKTHTH 362
            ..|.|.|...|||||..|||||:|.:.|..|::|:||.|.|.|..|...|...|:|:.|.|.||
  Rat   373 KTHYRIHTGEKPYKCTECDKSFTQYSHLRRHQRIYTGKKLYRCEVCDKWFTMSSSLSRHQKIHT- 436

  Fly   363 QIAPGGVGGAGGGGGAVTATVDHSMPAPLAPGTQQLTSGLLPNNLHGSTANIIQLDHHPLLHFLD 427
                                                         ...|......|    :.|
  Rat   437 ---------------------------------------------EAKTYKCKDCD----IFF-- 450

  Fly   428 GSTTVSSVVATAAANTKVEHF--QAGGSPSGRMTVVGTINMLKGDNPDRPFGCSVCQRFFSQQST 490
              |..||:......:|..:|.  |.|.|.:...|:.....:..|   ::|:.||.|.:.|.|.|.
  Rat   451 --THYSSLRRHQRVHTGEKHTCKQCGKSFTRGSTLRAHQRIHTG---EKPYKCSKCDKSFIQASQ 510

  Fly   491 LVNHIKTHTGEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSFCPKQFRQKSTLQNHLRVHT 555
            |..|.:.||||:||.||.|..:....|.|..|.|||||||||.|..|.|.:.|.|.|:.|.:|||
  Rat   511 LRTHQRVHTGERPYVCKECGKSLTTCAILRAHQKIHTGEKPYKCMECGKSYIQYSHLKRHQKVHT 575

Fly 556 555
Rat 576 575

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.