DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh3 and Opn1mw

DIOPT Version :10

Sequence 1:NP_524411.1 Gene:Rh3 / 42398 FlyBaseID:FBgn0003249 Length:383 Species:Drosophila melanogaster
Sequence 2:NP_446000.1 Gene:Opn1mw / 89810 RGDID:620978 Length:359 Species:Rattus norvegicus


Alignment Length:343 Identity:86/343 - (25%)
Similarity:141/343 - (41%) Gaps:43/343 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 HIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFM 106
            ||...|         :.:|..|..|...:.|:..||||:......|.||.|.|.:::|||..|..
  Rat    41 HIAPRW---------VYHLTSTWMILVVIASVFTNGLVLAATMRFKKLRHPLNWILVNLAVADLA 96

  Fly   107 -MMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEGKMTHG 170
             .::.:.|.:.|..:..:.|||..|.|.|.|.|..||....:.|.|:::|:.|:.:|........
  Rat    97 ETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDA 161

  Fly   171 K-AIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLT-------DNFDTRLFVACIFF 227
            | |...|:|.:::|..| .|.....|.|:.|.|..|||..|..:       .::...|.|.|..|
  Rat   162 KLATVGIVFSWVWAAVW-TAPPIFGWSRYWPYGLKTSCGPDVFSGTSYPGVQSYMMVLMVTCCIF 225

  Fly   228 FSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFL 292
                 |.::|...|.|:       ..|:|..||:.. ||      ::.:.||..:.:..:.:.|.
  Rat   226 -----PLSIIVLCYLQV-------WLAIRAVAKQQK-ES------ESTQKAEKEVTRMVVVMVFA 271

  Fly   293 FFCSWTPYGVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLA 357
            :...|.||...:............|....:|:...|.....:|.:|...:.::|     .|....
  Rat   272 YCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPIIYVFMNRQFR-----NCILQL 331

  Fly   358 LNEKAPESSAVASTSTTQ 375
            ..:|..:||.::|||.|:
  Rat   332 FGKKVDDSSELSSTSKTE 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh3NP_524411.1 7tmA_photoreceptors_insect 59..349 CDD:320207 75/298 (25%)
TM helix 1 60..86 CDD:320207 8/25 (32%)
TM helix 2 93..118 CDD:320207 6/25 (24%)
TM helix 3 130..160 CDD:320207 11/29 (38%)
TM helix 4 170..190 CDD:320207 6/20 (30%)
TM helix 5 218..247 CDD:320207 8/28 (29%)
TM helix 6 277..307 CDD:320207 6/29 (21%)
TM helix 7 317..342 CDD:320207 5/24 (21%)
Opn1mwNP_446000.1 Required for 11-cis-retinal regeneration. /evidence=ECO:0000250|UniProtKB:P04001 12..38
7tm_GPCRs 37..328 CDD:475119 78/320 (24%)
TM helix 1 51..75 CDD:410628 7/23 (30%)
TM helix 2 84..106 CDD:410628 6/21 (29%)
TM helix 3 122..144 CDD:410628 8/21 (38%)
TM helix 4 166..182 CDD:410628 5/16 (31%)
TM helix 5 212..235 CDD:410628 6/27 (22%)
TM helix 6 262..284 CDD:410628 4/21 (19%)
TM helix 7 296..321 CDD:410628 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.

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